Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.4■□□□□ 0.86
Shkbp1Q6P7W2 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shkbp1Q6P7W2 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shkbp1Q6P7W2 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.4■□□□□ 0.86
Shkbp1Q6P7W2 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Shkbp1Q6P7W2 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Shkbp1Q6P7W2 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
Shkbp1Q6P7W2 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shkbp1Q6P7W2 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shkbp1Q6P7W2 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Shkbp1Q6P7W2 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.39■□□□□ 0.85
Shkbp1Q6P7W2 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Shkbp1Q6P7W2 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Shkbp1Q6P7W2 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shkbp1Q6P7W2 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shkbp1Q6P7W2 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Gm6420-201ENSMUST00000193885 723 ntBASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Shkbp1Q6P7W2 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Gm13534-201ENSMUST00000121169 513 ntBASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shkbp1Q6P7W2 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Shkbp1Q6P7W2 Gm12441-201ENSMUST00000121806 588 ntBASIC20.33■□□□□ 0.85
Shkbp1Q6P7W2 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Shkbp1Q6P7W2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Gm13148-201ENSMUST00000118892 745 ntBASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Nespas-201ENSMUST00000143738 1083 ntBASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shkbp1Q6P7W2 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Gm4968-201ENSMUST00000071458 858 ntBASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shkbp1Q6P7W2 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shkbp1Q6P7W2 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shkbp1Q6P7W2 Gm6365-201ENSMUST00000054711 744 ntBASIC20.3■□□□□ 0.84
Shkbp1Q6P7W2 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.3■□□□□ 0.84
Shkbp1Q6P7W2 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shkbp1Q6P7W2 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Shkbp1Q6P7W2 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Shkbp1Q6P7W2 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Shkbp1Q6P7W2 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.29■□□□□ 0.84
Shkbp1Q6P7W2 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.29■□□□□ 0.84
Shkbp1Q6P7W2 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Shkbp1Q6P7W2 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms