Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Six3Q62233 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Six3Q62233 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Six3Q62233 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Six3Q62233 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Six3Q62233 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Six3Q62233 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.98■□□□□ 0.63
Six3Q62233 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Six3Q62233 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Six3Q62233 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Six3Q62233 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Gm12922-201ENSMUST00000120626 809 ntBASIC18.97■□□□□ 0.63
Six3Q62233 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.97■□□□□ 0.63
Six3Q62233 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
Six3Q62233 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Six3Q62233 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.97■□□□□ 0.63
Six3Q62233 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Six3Q62233 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Six3Q62233 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Six3Q62233 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Six3Q62233 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Six3Q62233 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.96■□□□□ 0.63
Six3Q62233 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Six3Q62233 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Six3Q62233 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Six3Q62233 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Six3Q62233 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Six3Q62233 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Six3Q62233 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC18.95■□□□□ 0.62
Six3Q62233 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC18.95■□□□□ 0.62
Six3Q62233 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Six3Q62233 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.95■□□□□ 0.62
Six3Q62233 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Six3Q62233 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Six3Q62233 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Six3Q62233 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Six3Q62233 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Six3Q62233 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC18.94■□□□□ 0.62
Six3Q62233 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.94■□□□□ 0.62
Six3Q62233 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Six3Q62233 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Six3Q62233 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
Six3Q62233 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
Six3Q62233 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Six3Q62233 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Six3Q62233 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Six3Q62233 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.92■□□□□ 0.62
Six3Q62233 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Six3Q62233 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Six3Q62233 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.91■□□□□ 0.62
Six3Q62233 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Six3Q62233 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Golph3-205ENSMUST00000228671 2842 ntBASIC18.91■□□□□ 0.62
Six3Q62233 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Six3Q62233 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Six3Q62233 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Six3Q62233 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.91■□□□□ 0.62
Six3Q62233 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Six3Q62233 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Six3Q62233 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
Six3Q62233 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC18.9■□□□□ 0.62
Six3Q62233 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Six3Q62233 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.9■□□□□ 0.62
Six3Q62233 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Six3Q62233 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms