Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Hmgb1P63158 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Hmgb1P63158 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Hmgb1P63158 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Hmgb1P63158 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Hmgb1P63158 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.32■■□□□ 1
Hmgb1P63158 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.32■■□□□ 1
Hmgb1P63158 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Hmgb1P63158 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
Hmgb1P63158 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Hmgb1P63158 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Hmgb1P63158 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.31■■□□□ 1
Hmgb1P63158 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Hmgb1P63158 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Hmgb1P63158 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC21.31■■□□□ 1
Hmgb1P63158 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Hmgb1P63158 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC21.31■■□□□ 1
Hmgb1P63158 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Hmgb1P63158 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Hmgb1P63158 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Hmgb1P63158 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Hmgb1P63158 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
Hmgb1P63158 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
Hmgb1P63158 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Hmgb1P63158 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Hmgb1P63158 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Hmgb1P63158 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Hmgb1P63158 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.29■■□□□ 1
Hmgb1P63158 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.28■■□□□ 1
Hmgb1P63158 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Hmgb1P63158 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.28■■□□□ 1
Hmgb1P63158 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Hmgb1P63158 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Hmgb1P63158 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.28■■□□□ 1
Hmgb1P63158 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.27■■□□□ 1
Hmgb1P63158 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb1P63158 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Hmgb1P63158 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
Hmgb1P63158 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC21.27■□□□□ 0.99
Hmgb1P63158 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Hmgb1P63158 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Hmgb1P63158 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Hmgb1P63158 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Hmgb1P63158 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hmgb1P63158 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.26■□□□□ 0.99
Hmgb1P63158 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.25■□□□□ 0.99
Hmgb1P63158 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.25■□□□□ 0.99
Hmgb1P63158 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmgb1P63158 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Hmgb1P63158 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
Hmgb1P63158 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
Hmgb1P63158 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb1P63158 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Hmgb1P63158 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgb1P63158 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgb1P63158 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.23■□□□□ 0.99
Hmgb1P63158 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.23■□□□□ 0.99
Hmgb1P63158 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgb1P63158 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgb1P63158 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgb1P63158 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmgb1P63158 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb1P63158 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Hmgb1P63158 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms