Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC17.64■□□□□ 0.41
Cdh11P55288 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.64■□□□□ 0.41
Cdh11P55288 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Cdh11P55288 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cdh11P55288 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC17.63■□□□□ 0.41
Cdh11P55288 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC17.63■□□□□ 0.41
Cdh11P55288 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Gm45417-201ENSMUST00000209533 758 ntBASIC17.63■□□□□ 0.41
Cdh11P55288 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.63■□□□□ 0.41
Cdh11P55288 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Cdh11P55288 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cdh11P55288 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Cdh11P55288 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC17.62■□□□□ 0.41
Cdh11P55288 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.62■□□□□ 0.41
Cdh11P55288 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC17.62■□□□□ 0.41
Cdh11P55288 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cdh11P55288 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Cdh11P55288 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.61■□□□□ 0.41
Cdh11P55288 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Cdh11P55288 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Cdh11P55288 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC17.61■□□□□ 0.41
Cdh11P55288 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cdh11P55288 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.6■□□□□ 0.41
Cdh11P55288 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Cdh11P55288 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC17.6■□□□□ 0.41
Cdh11P55288 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cdh11P55288 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdh11P55288 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Cdh11P55288 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Cdh11P55288 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.59■□□□□ 0.41
Cdh11P55288 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Cdh11P55288 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Cdh11P55288 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Cdh11P55288 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Cdh11P55288 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Cdh11P55288 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.58■□□□□ 0.4
Cdh11P55288 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.57■□□□□ 0.4
Cdh11P55288 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Cdh11P55288 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Cdh11P55288 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Cdh11P55288 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms