Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sox1P53783 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sox1P53783 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.04■□□□□ 0.8
Sox1P53783 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.04■□□□□ 0.8
Sox1P53783 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
Sox1P53783 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sox1P53783 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Sox1P53783 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Mir1199-201ENSMUST00000117015 119 ntBASIC20.03■□□□□ 0.8
Sox1P53783 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.03■□□□□ 0.8
Sox1P53783 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Sox1P53783 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Sox1P53783 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
Sox1P53783 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Sox1P53783 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Sox1P53783 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
Sox1P53783 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sox1P53783 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Gm18101-201ENSMUST00000215769 548 ntBASIC20.01■□□□□ 0.79
Sox1P53783 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox1P53783 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sox1P53783 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sox1P53783 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20■□□□□ 0.79
Sox1P53783 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sox1P53783 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sox1P53783 Gm10517-202ENSMUST00000192970 758 ntBASIC20■□□□□ 0.79
Sox1P53783 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sox1P53783 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Sox1P53783 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sox1P53783 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20■□□□□ 0.79
Sox1P53783 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.99■□□□□ 0.79
Sox1P53783 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Sox1P53783 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.99■□□□□ 0.79
Sox1P53783 Gm2559-201ENSMUST00000201323 363 ntBASIC19.99■□□□□ 0.79
Sox1P53783 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.99■□□□□ 0.79
Sox1P53783 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Sox1P53783 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox1P53783 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sox1P53783 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.98■□□□□ 0.79
Sox1P53783 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sox1P53783 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sox1P53783 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.98■□□□□ 0.79
Sox1P53783 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Sox1P53783 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Sox1P53783 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Sox1P53783 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sox1P53783 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sox1P53783 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sox1P53783 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sox1P53783 Dio3-201ENSMUST00000097228 1449 ntBASIC19.97■□□□□ 0.79
Sox1P53783 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Sox1P53783 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.97■□□□□ 0.79
Sox1P53783 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC19.97■□□□□ 0.79
Sox1P53783 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Sox1P53783 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Sox1P53783 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms