Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Gm12896-201ENSMUST00000118430 226 ntBASIC20.23■□□□□ 0.83
Cxcl12P40224 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Cxcl12P40224 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.23■□□□□ 0.83
Cxcl12P40224 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC20.23■□□□□ 0.83
Cxcl12P40224 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cxcl12P40224 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cxcl12P40224 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cxcl12P40224 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.23■□□□□ 0.83
Cxcl12P40224 Gm37563-201ENSMUST00000192580 1513 ntBASIC20.22■□□□□ 0.83
Cxcl12P40224 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Cxcl12P40224 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.22■□□□□ 0.83
Cxcl12P40224 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cxcl12P40224 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cxcl12P40224 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cxcl12P40224 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cxcl12P40224 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cxcl12P40224 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cxcl12P40224 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cxcl12P40224 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cxcl12P40224 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cxcl12P40224 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cxcl12P40224 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.2■□□□□ 0.82
Cxcl12P40224 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cxcl12P40224 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cxcl12P40224 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cxcl12P40224 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cxcl12P40224 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cxcl12P40224 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.19■□□□□ 0.82
Cxcl12P40224 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cxcl12P40224 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cxcl12P40224 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
Cxcl12P40224 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.19■□□□□ 0.82
Cxcl12P40224 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Cxcl12P40224 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cxcl12P40224 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cxcl12P40224 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Cxcl12P40224 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Cxcl12P40224 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Cxcl12P40224 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.18■□□□□ 0.82
Cxcl12P40224 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cxcl12P40224 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cxcl12P40224 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cxcl12P40224 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cxcl12P40224 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.17■□□□□ 0.82
Cxcl12P40224 Gm715-201ENSMUST00000117865 831 ntBASIC20.17■□□□□ 0.82
Cxcl12P40224 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.17■□□□□ 0.82
Cxcl12P40224 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cxcl12P40224 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cxcl12P40224 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cxcl12P40224 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cxcl12P40224 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.16■□□□□ 0.82
Cxcl12P40224 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cxcl12P40224 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
Cxcl12P40224 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.15■□□□□ 0.82
Cxcl12P40224 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.15■□□□□ 0.82
Cxcl12P40224 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.15■□□□□ 0.82
Cxcl12P40224 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cxcl12P40224 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cxcl12P40224 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cxcl12P40224 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cxcl12P40224 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cxcl12P40224 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cxcl12P40224 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.81
Cxcl12P40224 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cxcl12P40224 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cxcl12P40224 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
Cxcl12P40224 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.13■□□□□ 0.81
Cxcl12P40224 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cxcl12P40224 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cxcl12P40224 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cxcl12P40224 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.13■□□□□ 0.81
Cxcl12P40224 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC20.13■□□□□ 0.81
Cxcl12P40224 Gm2559-201ENSMUST00000201323 363 ntBASIC20.13■□□□□ 0.81
Cxcl12P40224 AC154649.1-201ENSMUST00000227392 384 ntBASIC20.13■□□□□ 0.81
Cxcl12P40224 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cxcl12P40224 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Cxcl12P40224 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
Cxcl12P40224 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cxcl12P40224 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms