Protein–RNA interactions for Protein: Q9JKU8

Lmx1a, LIM homeobox transcription factor 1-alpha, mousemouse

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1aQ9JKU8 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1aQ9JKU8 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1aQ9JKU8 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1aQ9JKU8 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1aQ9JKU8 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lmx1aQ9JKU8 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lmx1aQ9JKU8 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.68■□□□□ 0.74
Lmx1aQ9JKU8 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lmx1aQ9JKU8 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Gm5408-201ENSMUST00000197998 747 ntBASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lmx1aQ9JKU8 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Gm7290-201ENSMUST00000104990 617 ntBASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Gm12918-201ENSMUST00000120234 636 ntBASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Gm15710-201ENSMUST00000121821 636 ntBASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Gm5075-201ENSMUST00000196916 622 ntBASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lmx1aQ9JKU8 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Lmx1aQ9JKU8 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Lmx1aQ9JKU8 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lmx1aQ9JKU8 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lmx1aQ9JKU8 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Lmx1aQ9JKU8 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.63■□□□□ 0.73
Lmx1aQ9JKU8 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Lmx1aQ9JKU8 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lmx1aQ9JKU8 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Gm12527-201ENSMUST00000117967 564 ntBASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lmx1aQ9JKU8 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Gm10252-201ENSMUST00000209541 832 ntBASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lmx1aQ9JKU8 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1aQ9JKU8 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
Lmx1aQ9JKU8 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1aQ9JKU8 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1aQ9JKU8 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1aQ9JKU8 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lmx1aQ9JKU8 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1aQ9JKU8 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1aQ9JKU8 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Lmx1aQ9JKU8 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.59■□□□□ 0.73
Lmx1aQ9JKU8 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms