Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Gm7143-201ENSMUST00000222811 859 ntBASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Lima1Q9ERG0 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Lima1Q9ERG0 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Lima1Q9ERG0 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Lima1Q9ERG0 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Lima1Q9ERG0 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.19■□□□□ 0.66
Lima1Q9ERG0 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lima1Q9ERG0 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Lima1Q9ERG0 Gm45102-201ENSMUST00000207427 857 ntBASIC19.18■□□□□ 0.66
Lima1Q9ERG0 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Lima1Q9ERG0 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.18■□□□□ 0.66
Lima1Q9ERG0 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Lima1Q9ERG0 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Lima1Q9ERG0 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Lima1Q9ERG0 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Lima1Q9ERG0 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms