Protein–RNA interactions for Protein: Q9CPR6

Krt88, Keratin 88, mousemouse

Predictions only

Length 171 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt88Q9CPR6 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.61■□□□□ 0.41
Krt88Q9CPR6 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Krt88Q9CPR6 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
Krt88Q9CPR6 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.61■□□□□ 0.41
Krt88Q9CPR6 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Krt88Q9CPR6 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Krt88Q9CPR6 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Gm7143-201ENSMUST00000222811 859 ntBASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.6■□□□□ 0.41
Krt88Q9CPR6 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Krt88Q9CPR6 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Krt88Q9CPR6 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Krt88Q9CPR6 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Krt88Q9CPR6 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Krt88Q9CPR6 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Mir6236-201ENSMUST00000184437 123 ntBASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Gm45444-201ENSMUST00000211394 898 ntBASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Krt88Q9CPR6 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Golph3-205ENSMUST00000228671 2842 ntBASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Krt88Q9CPR6 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt88Q9CPR6 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt88Q9CPR6 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt88Q9CPR6 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt88Q9CPR6 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Krt88Q9CPR6 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Krt88Q9CPR6 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Krt88Q9CPR6 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Krt88Q9CPR6 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms