Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC22.36■■□□□ 1.17
Col11a1Q61245 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Col11a1Q61245 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Col11a1Q61245 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Col11a1Q61245 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col11a1Q61245 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col11a1Q61245 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Col11a1Q61245 Gm13836-201ENSMUST00000121159 501 ntBASIC22.35■■□□□ 1.17
Col11a1Q61245 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col11a1Q61245 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Col11a1Q61245 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Col11a1Q61245 Gm37563-201ENSMUST00000192580 1513 ntBASIC22.34■■□□□ 1.17
Col11a1Q61245 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Col11a1Q61245 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Col11a1Q61245 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Col11a1Q61245 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Col11a1Q61245 AC154266.1-201ENSMUST00000223190 503 ntBASIC22.34■■□□□ 1.17
Col11a1Q61245 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Col11a1Q61245 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Col11a1Q61245 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Col11a1Q61245 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Col11a1Q61245 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC22.33■■□□□ 1.17
Col11a1Q61245 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Col11a1Q61245 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Col11a1Q61245 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Col11a1Q61245 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC22.33■■□□□ 1.16
Col11a1Q61245 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC22.33■■□□□ 1.16
Col11a1Q61245 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Col11a1Q61245 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Col11a1Q61245 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Col11a1Q61245 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Col11a1Q61245 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC22.32■■□□□ 1.16
Col11a1Q61245 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC22.31■■□□□ 1.16
Col11a1Q61245 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Col11a1Q61245 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Col11a1Q61245 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Col11a1Q61245 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Col11a1Q61245 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Col11a1Q61245 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC22.31■■□□□ 1.16
Col11a1Q61245 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Col11a1Q61245 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Col11a1Q61245 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC22.3■■□□□ 1.16
Col11a1Q61245 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
Col11a1Q61245 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Col11a1Q61245 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC22.29■■□□□ 1.16
Col11a1Q61245 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
Col11a1Q61245 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Col11a1Q61245 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Col11a1Q61245 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
Col11a1Q61245 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Gm29994-201ENSMUST00000195495 1193 ntBASIC22.29■■□□□ 1.16
Col11a1Q61245 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC22.29■■□□□ 1.16
Col11a1Q61245 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Col11a1Q61245 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Col11a1Q61245 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Col11a1Q61245 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Col11a1Q61245 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Col11a1Q61245 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Col11a1Q61245 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC22.28■■□□□ 1.16
Col11a1Q61245 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
Col11a1Q61245 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Col11a1Q61245 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC22.27■■□□□ 1.16
Col11a1Q61245 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC22.27■■□□□ 1.15
Col11a1Q61245 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col11a1Q61245 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
Col11a1Q61245 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC22.26■■□□□ 1.15
Col11a1Q61245 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col11a1Q61245 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Col11a1Q61245 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC22.26■■□□□ 1.15
Col11a1Q61245 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Col11a1Q61245 Gm5643-201ENSMUST00000117081 966 ntBASIC22.25■■□□□ 1.15
Col11a1Q61245 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
Col11a1Q61245 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
Col11a1Q61245 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col11a1Q61245 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col11a1Q61245 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col11a1Q61245 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col11a1Q61245 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Col11a1Q61245 Gm715-201ENSMUST00000117865 831 ntBASIC22.24■■□□□ 1.15
Col11a1Q61245 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Col11a1Q61245 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Col11a1Q61245 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Col11a1Q61245 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Col11a1Q61245 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms