Protein–RNA interactions for Protein: Q5R1I4

Trav6-2, T cell receptor alpha variable 6-2 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-2Q5R1I4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-2Q5R1I4 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-2Q5R1I4 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.22■□□□□ 0.35
Trav6-2Q5R1I4 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-2Q5R1I4 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-2Q5R1I4 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav6-2Q5R1I4 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav6-2Q5R1I4 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Trav6-2Q5R1I4 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trav6-2Q5R1I4 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Gm27011-201ENSMUST00000182352 972 ntBASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6-2Q5R1I4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6-2Q5R1I4 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Mir5133-201ENSMUST00000174955 77 ntBASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Trav6-2Q5R1I4 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 AA386476-201ENSMUST00000098781 1665 ntBASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav6-2Q5R1I4 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC17.15■□□□□ 0.34
Trav6-2Q5R1I4 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6-2Q5R1I4 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms