Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Col28a1Q2UY11 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.88■□□□□ 0.61
Col28a1Q2UY11 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Col28a1Q2UY11 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col28a1Q2UY11 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col28a1Q2UY11 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.84■□□□□ 0.61
Col28a1Q2UY11 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col28a1Q2UY11 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
Col28a1Q2UY11 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col28a1Q2UY11 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Col28a1Q2UY11 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col28a1Q2UY11 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 108.8 ms