Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shox2P70390 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Shox2P70390 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Shox2P70390 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Shox2P70390 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Shox2P70390 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Shox2P70390 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Shox2P70390 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Shox2P70390 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.41■□□□□ 0.7
Shox2P70390 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Shox2P70390 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC19.4■□□□□ 0.7
Shox2P70390 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC19.4■□□□□ 0.7
Shox2P70390 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Shox2P70390 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.39■□□□□ 0.7
Shox2P70390 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Shox2P70390 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shox2P70390 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Shox2P70390 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Shox2P70390 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shox2P70390 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shox2P70390 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shox2P70390 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Shox2P70390 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Shox2P70390 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
Shox2P70390 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC19.38■□□□□ 0.69
Shox2P70390 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Shox2P70390 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.37■□□□□ 0.69
Shox2P70390 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.37■□□□□ 0.69
Shox2P70390 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Shox2P70390 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.37■□□□□ 0.69
Shox2P70390 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.37■□□□□ 0.69
Shox2P70390 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Shox2P70390 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.36■□□□□ 0.69
Shox2P70390 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.36■□□□□ 0.69
Shox2P70390 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.36■□□□□ 0.69
Shox2P70390 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Shox2P70390 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.35■□□□□ 0.69
Shox2P70390 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shox2P70390 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shox2P70390 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Shox2P70390 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.35■□□□□ 0.69
Shox2P70390 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.35■□□□□ 0.69
Shox2P70390 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shox2P70390 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Shox2P70390 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Shox2P70390 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Shox2P70390 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.35■□□□□ 0.69
Shox2P70390 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Shox2P70390 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Shox2P70390 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Shox2P70390 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shox2P70390 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Shox2P70390 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Shox2P70390 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms