Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp4P35123 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.42■□□□□ 0.86
Usp4P35123 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp4P35123 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp4P35123 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Usp4P35123 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp4P35123 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp4P35123 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Usp4P35123 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.41■□□□□ 0.86
Usp4P35123 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp4P35123 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp4P35123 Gm12922-201ENSMUST00000120626 809 ntBASIC20.41■□□□□ 0.86
Usp4P35123 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp4P35123 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp4P35123 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp4P35123 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Usp4P35123 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Usp4P35123 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.4■□□□□ 0.86
Usp4P35123 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Usp4P35123 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp4P35123 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Usp4P35123 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp4P35123 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Usp4P35123 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp4P35123 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
Usp4P35123 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Usp4P35123 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp4P35123 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Usp4P35123 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Usp4P35123 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.38■□□□□ 0.85
Usp4P35123 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp4P35123 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.38■□□□□ 0.85
Usp4P35123 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.38■□□□□ 0.85
Usp4P35123 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC20.38■□□□□ 0.85
Usp4P35123 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.38■□□□□ 0.85
Usp4P35123 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp4P35123 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Usp4P35123 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp4P35123 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.37■□□□□ 0.85
Usp4P35123 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.37■□□□□ 0.85
Usp4P35123 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.37■□□□□ 0.85
Usp4P35123 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.37■□□□□ 0.85
Usp4P35123 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Usp4P35123 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Usp4P35123 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp4P35123 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.35■□□□□ 0.85
Usp4P35123 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.35■□□□□ 0.85
Usp4P35123 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 Gm21956-201ENSMUST00000179946 522 ntBASIC20.35■□□□□ 0.85
Usp4P35123 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.35■□□□□ 0.85
Usp4P35123 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.35■□□□□ 0.85
Usp4P35123 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp4P35123 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
Usp4P35123 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Usp4P35123 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Usp4P35123 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.34■□□□□ 0.85
Usp4P35123 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Usp4P35123 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.34■□□□□ 0.85
Usp4P35123 Gm7143-201ENSMUST00000222811 859 ntBASIC20.34■□□□□ 0.85
Usp4P35123 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.34■□□□□ 0.85
Usp4P35123 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp4P35123 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC20.34■□□□□ 0.85
Usp4P35123 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp4P35123 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.33■□□□□ 0.85
Usp4P35123 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp4P35123 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Usp4P35123 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
Usp4P35123 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Usp4P35123 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.33■□□□□ 0.85
Usp4P35123 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp4P35123 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.33■□□□□ 0.85
Usp4P35123 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp4P35123 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp4P35123 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp4P35123 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Usp4P35123 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp4P35123 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp4P35123 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 104.8 ms