Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RaraP11416 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RaraP11416 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RaraP11416 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RaraP11416 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RaraP11416 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RaraP11416 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.14■□□□□ 0.97
RaraP11416 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RaraP11416 Gm45102-201ENSMUST00000207427 857 ntBASIC21.14■□□□□ 0.97
RaraP11416 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RaraP11416 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RaraP11416 AA386476-201ENSMUST00000098781 1665 ntBASIC21.14■□□□□ 0.97
RaraP11416 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RaraP11416 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RaraP11416 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RaraP11416 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RaraP11416 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RaraP11416 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RaraP11416 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RaraP11416 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.12■□□□□ 0.97
RaraP11416 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.12■□□□□ 0.97
RaraP11416 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.12■□□□□ 0.97
RaraP11416 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.12■□□□□ 0.97
RaraP11416 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RaraP11416 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RaraP11416 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
RaraP11416 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.11■□□□□ 0.97
RaraP11416 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
RaraP11416 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RaraP11416 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RaraP11416 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RaraP11416 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RaraP11416 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RaraP11416 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RaraP11416 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RaraP11416 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
RaraP11416 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RaraP11416 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RaraP11416 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RaraP11416 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RaraP11416 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RaraP11416 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RaraP11416 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RaraP11416 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
RaraP11416 Golph3-205ENSMUST00000228671 2842 ntBASIC21.09■□□□□ 0.97
RaraP11416 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.08■□□□□ 0.97
RaraP11416 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.08■□□□□ 0.97
RaraP11416 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
RaraP11416 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
RaraP11416 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RaraP11416 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
RaraP11416 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
RaraP11416 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
RaraP11416 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RaraP11416 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RaraP11416 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RaraP11416 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.07■□□□□ 0.96
RaraP11416 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RaraP11416 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RaraP11416 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RaraP11416 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RaraP11416 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RaraP11416 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.05■□□□□ 0.96
RaraP11416 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC21.05■□□□□ 0.96
RaraP11416 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.05■□□□□ 0.96
RaraP11416 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Rps24-207ENSMUST00000224568 714 ntBASIC21.05■□□□□ 0.96
RaraP11416 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RaraP11416 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RaraP11416 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
RaraP11416 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RaraP11416 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RaraP11416 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms