Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
MSH5O43196 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC29.34■■■□□ 2.29
MSH5O43196 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC29.34■■■□□ 2.29
MSH5O43196 NME4-202ENST00000382940 766 ntTSL 3 BASIC29.34■■■□□ 2.29
MSH5O43196 BX842568.3-201ENST00000418104 571 ntBASIC29.34■■■□□ 2.29
MSH5O43196 EIF2S2P3-201ENST00000428356 999 ntBASIC29.34■■■□□ 2.29
MSH5O43196 AC090142.2-201ENST00000483263 416 ntBASIC29.34■■■□□ 2.29
MSH5O43196 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC29.34■■■□□ 2.29
MSH5O43196 NME4-211ENST00000620944 1193 ntTSL 2 BASIC29.34■■■□□ 2.29
MSH5O43196 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC29.34■■■□□ 2.29
MSH5O43196 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
MSH5O43196 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L2-201ENST00000561772 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC29.33■■■□□ 2.29
MSH5O43196 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L6-201ENST00000626483 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L1-201ENST00000627662 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L8-201ENST00000629013 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L3-201ENST00000630187 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L7-201ENST00000630678 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 DUX4L5-201ENST00000630834 1275 ntBASIC29.33■■■□□ 2.29
MSH5O43196 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC29.33■■■□□ 2.29
MSH5O43196 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
MSH5O43196 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
MSH5O43196 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
MSH5O43196 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH5O43196 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH5O43196 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH5O43196 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
MSH5O43196 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC29.32■■■□□ 2.28
MSH5O43196 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
MSH5O43196 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC29.32■■■□□ 2.28
MSH5O43196 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.32■■■□□ 2.28
MSH5O43196 AC126544.1-201ENST00000580842 1059 ntBASIC29.32■■■□□ 2.28
MSH5O43196 AC245100.8-202ENST00000629247 1058 ntBASIC29.32■■■□□ 2.28
MSH5O43196 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC29.32■■■□□ 2.28
MSH5O43196 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC29.32■■■□□ 2.28
MSH5O43196 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
MSH5O43196 NFE2L3P1-201ENST00000588207 1959 ntBASIC29.32■■■□□ 2.28
MSH5O43196 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC29.31■■■□□ 2.28
MSH5O43196 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH5O43196 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
MSH5O43196 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH5O43196 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
MSH5O43196 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
MSH5O43196 AC006455.2-201ENST00000429931 906 ntBASIC29.31■■■□□ 2.28
MSH5O43196 GXYLT1P2-201ENST00000433312 1230 ntBASIC29.31■■■□□ 2.28
MSH5O43196 AL132657.2-201ENST00000564417 358 ntBASIC29.31■■■□□ 2.28
MSH5O43196 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC29.3■■■□□ 2.28
MSH5O43196 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
MSH5O43196 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH5O43196 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH5O43196 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH5O43196 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC29.3■■■□□ 2.28
MSH5O43196 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC29.3■■■□□ 2.28
MSH5O43196 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
MSH5O43196 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC29.3■■■□□ 2.28
MSH5O43196 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
MSH5O43196 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.28
MSH5O43196 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH5O43196 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC29.29■■■□□ 2.28
MSH5O43196 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH5O43196 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC29.29■■■□□ 2.28
MSH5O43196 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
MSH5O43196 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC29.29■■■□□ 2.28
MSH5O43196 AC022079.1-201ENST00000621546 602 ntBASIC29.29■■■□□ 2.28
MSH5O43196 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC29.29■■■□□ 2.28
MSH5O43196 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH5O43196 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH5O43196 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC29.29■■■□□ 2.28
MSH5O43196 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
MSH5O43196 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
MSH5O43196 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
MSH5O43196 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
MSH5O43196 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
MSH5O43196 RAB43-208ENST00000615093 783 ntTSL 5 BASIC29.28■■■□□ 2.28
MSH5O43196 AC241377.3-202ENST00000626088 1088 ntBASIC29.28■■■□□ 2.28
MSH5O43196 AC241585.3-202ENST00000628937 1088 ntBASIC29.28■■■□□ 2.28
MSH5O43196 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC29.28■■■□□ 2.28
MSH5O43196 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
MSH5O43196 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC29.27■■■□□ 2.28
MSH5O43196 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
MSH5O43196 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC29.27■■■□□ 2.28
MSH5O43196 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
MSH5O43196 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
MSH5O43196 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC29.27■■■□□ 2.28
MSH5O43196 AC006518.1-201ENST00000541449 943 ntBASIC29.27■■■□□ 2.28
MSH5O43196 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC29.27■■■□□ 2.28
MSH5O43196 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.27■■■□□ 2.28
MSH5O43196 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
MSH5O43196 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH5O43196 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC29.26■■■□□ 2.27
MSH5O43196 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC29.26■■■□□ 2.27
MSH5O43196 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC29.26■■■□□ 2.27
MSH5O43196 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC29.26■■■□□ 2.27
MSH5O43196 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
MSH5O43196 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
MSH5O43196 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
MSH5O43196 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC29.25■■■□□ 2.27
MSH5O43196 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms