Protein–RNA interactions for Protein: A6H584

Col6a5, Collagen alpha-5(VI) chain, mousemouse

Predictions only

Length 2,640 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a5A6H584 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col6a5A6H584 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col6a5A6H584 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Col6a5A6H584 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col6a5A6H584 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC15.02□□□□□ -0.01
Col6a5A6H584 Gm2559-201ENSMUST00000201323 363 ntBASIC15.02□□□□□ -0.01
Col6a5A6H584 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC15.02□□□□□ -0.01
Col6a5A6H584 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a5A6H584 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a5A6H584 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col6a5A6H584 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC15.02□□□□□ -0.01
Col6a5A6H584 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a5A6H584 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a5A6H584 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC15.01□□□□□ -0.01
Col6a5A6H584 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Col6a5A6H584 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC15.01□□□□□ -0.01
Col6a5A6H584 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a5A6H584 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a5A6H584 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC15.01□□□□□ -0.01
Col6a5A6H584 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col6a5A6H584 Gm10167-201ENSMUST00000150411 1479 ntBASIC15.01□□□□□ -0.01
Col6a5A6H584 Gm15378-201ENSMUST00000121894 207 ntBASIC15□□□□□ -0.01
Col6a5A6H584 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
Col6a5A6H584 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC15□□□□□ -0.01
Col6a5A6H584 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC15□□□□□ -0.01
Col6a5A6H584 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Col6a5A6H584 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col6a5A6H584 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
Col6a5A6H584 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Col6a5A6H584 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Col6a5A6H584 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC14.99□□□□□ -0.01
Col6a5A6H584 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col6a5A6H584 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC14.98□□□□□ -0.01
Col6a5A6H584 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Col6a5A6H584 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.98□□□□□ -0.01
Col6a5A6H584 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Gm38205-201ENSMUST00000192243 258 ntBASIC14.98□□□□□ -0.01
Col6a5A6H584 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col6a5A6H584 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a5A6H584 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Col6a5A6H584 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC14.97□□□□□ -0.01
Col6a5A6H584 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Col6a5A6H584 CT010444.2-201ENSMUST00000217877 1629 ntBASIC14.97□□□□□ -0.01
Col6a5A6H584 Gm8668-201ENSMUST00000120559 1447 ntBASIC14.97□□□□□ -0.01
Col6a5A6H584 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a5A6H584 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a5A6H584 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col6a5A6H584 Gm10698-201ENSMUST00000182663 604 ntBASIC14.96□□□□□ -0.01
Col6a5A6H584 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC14.96□□□□□ -0.01
Col6a5A6H584 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC14.96□□□□□ -0.01
Col6a5A6H584 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC14.96□□□□□ -0.01
Col6a5A6H584 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col6a5A6H584 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
Col6a5A6H584 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col6a5A6H584 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col6a5A6H584 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
Col6a5A6H584 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col6a5A6H584 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
Col6a5A6H584 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Ank2-226ENSMUST00000189368 339 ntBASIC14.95□□□□□ -0.02
Col6a5A6H584 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Col6a5A6H584 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC14.95□□□□□ -0.02
Col6a5A6H584 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms