Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Gm20611-201ENSMUST00000177492 1131 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Gm43480-201ENSMUST00000201201 416 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 Gm45258-201ENSMUST00000210042 853 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 Prss51-204ENSMUST00000224112 1042 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Hmgb3O54879 CT030637.1-201ENSMUST00000228016 669 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC8.11□□□□□ -1.11
Hmgb3O54879 Olfr1513-201ENSMUST00000089739 942 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Hmgb3O54879 Drosha-207ENSMUST00000169061 4570 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Golgb1-202ENSMUST00000039855 10847 ntAPPRIS P2 TSL 5 BASIC8.11□□□□□ -1.11
Hmgb3O54879 Lif-202ENSMUST00000066283 4026 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
Hmgb3O54879 Ggps1-201ENSMUST00000170957 4244 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Arhgap45-201ENSMUST00000043311 3499 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Ect2l-203ENSMUST00000207827 2730 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Hmgb3O54879 Gsdmc2-201ENSMUST00000089900 1981 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
Hmgb3O54879 Ddx19b-201ENSMUST00000040241 6612 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Cd22-210ENSMUST00000189718 3672 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Aldh2-201ENSMUST00000031411 3867 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 4930571K23Rik-201ENSMUST00000166958 2153 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 Gm37745-201ENSMUST00000193304 8163 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 Prpf31-201ENSMUST00000008517 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Dtnbos-201ENSMUST00000173847 1662 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Chad-201ENSMUST00000040418 1680 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Itih1-201ENSMUST00000006704 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 P3h1-202ENSMUST00000081606 2820 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Rapgef6-210ENSMUST00000207429 5164 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Hmgb3O54879 Gm37608-201ENSMUST00000195696 1880 ntBASIC8.11□□□□□ -1.11
Hmgb3O54879 Tgm4-201ENSMUST00000026893 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm43910-201ENSMUST00000204561 3241 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Med24-201ENSMUST00000017354 3410 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Wdr37-201ENSMUST00000021572 4526 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Cbx3-203ENSMUST00000114445 1585 ntTSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Fktn-203ENSMUST00000128667 6080 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm2721-201ENSMUST00000222380 1571 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Vmn1r90-204ENSMUST00000226802 7185 ntAPPRIS P2 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Parva-201ENSMUST00000033030 4454 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Ddx5-201ENSMUST00000021062 3559 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Ddx24-206ENSMUST00000221211 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Fam13a-201ENSMUST00000089860 5786 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Map2-207ENSMUST00000114018 5303 ntAPPRIS P3 TSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 AL662807.2-201ENSMUST00000224024 3335 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Cd22-201ENSMUST00000019248 3974 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 C330018D20Rik-201ENSMUST00000025488 2400 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Sycp2l-201ENSMUST00000124093 2641 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Dhx8-201ENSMUST00000039152 4325 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm18294-201ENSMUST00000176980 1748 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Kif16b-203ENSMUST00000211861 4523 ntTSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Utp6-201ENSMUST00000043152 3877 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Dhx35-201ENSMUST00000029186 3212 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Olfr173-202ENSMUST00000206205 2778 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm11701-201ENSMUST00000121277 1142 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 B230307C23Rik-202ENSMUST00000122450 1298 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm5529-201ENSMUST00000165691 891 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm27910-201ENSMUST00000185004 107 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Tex35-206ENSMUST00000187546 856 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm2071-201ENSMUST00000193335 774 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm42816-201ENSMUST00000198433 325 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm42655-201ENSMUST00000202782 1134 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm45363-201ENSMUST00000210196 1294 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 AC134439.3-201ENSMUST00000223486 851 ntTSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 AC122346.3-201ENSMUST00000223983 306 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 CT009713.2-201ENSMUST00000225532 1149 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 AC131330.1-201ENSMUST00000227814 1015 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 1700047G03Rik-205ENSMUST00000227822 1048 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm10053-201ENSMUST00000073080 949 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Sgca-201ENSMUST00000100551 1465 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 4833412K13Rik-201ENSMUST00000195509 1479 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Nox1-202ENSMUST00000113275 1694 ntTSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm42765-202ENSMUST00000200017 3131 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Ebf3-205ENSMUST00000209578 1863 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Rpgr-204ENSMUST00000115532 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Apol11b-201ENSMUST00000166623 2057 ntAPPRIS P1 TSL 3 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Bcl2l11-201ENSMUST00000019281 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 CT009546.2-201ENSMUST00000223012 3476 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm42499-201ENSMUST00000196193 1412 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Gm4926-201ENSMUST00000132691 1610 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Zfp133-ps-201ENSMUST00000119058 1802 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Tuba4a-202ENSMUST00000186213 2840 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Snx25-201ENSMUST00000041582 3206 ntAPPRIS P2 TSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Dusp27-202ENSMUST00000192369 4045 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Epb41l3-201ENSMUST00000080208 4047 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Adgrl3-218ENSMUST00000122037 4649 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Commd2-202ENSMUST00000160959 2992 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Hmgb3O54879 Cnga3-204ENSMUST00000195272 2197 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 Vmn2r-ps97-201ENSMUST00000222427 1970 ntBASIC8.1□□□□□ -1.11
Hmgb3O54879 Nox1-204ENSMUST00000159259 1581 ntTSL 5 BASIC8.1□□□□□ -1.11
Hmgb3O54879 AC154186.1-201ENSMUST00000227711 1597 ntBASIC8.1□□□□□ -1.11
Retrieved 100 of 76,532 protein–RNA pairs in 111.9 ms