Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Scn5aQ9JJV9 Gm6420-201ENSMUST00000193885 723 ntBASIC20.53■□□□□ 0.88
Scn5aQ9JJV9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn5aQ9JJV9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn5aQ9JJV9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Scn5aQ9JJV9 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
Scn5aQ9JJV9 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Gm12527-201ENSMUST00000117967 564 ntBASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn5aQ9JJV9 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn5aQ9JJV9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Gm6365-201ENSMUST00000054711 744 ntBASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.49■□□□□ 0.87
Scn5aQ9JJV9 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 Gm5408-201ENSMUST00000197998 747 ntBASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scn5aQ9JJV9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Scn5aQ9JJV9 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Scn5aQ9JJV9 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm7290-201ENSMUST00000104990 617 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm12918-201ENSMUST00000120234 636 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm15710-201ENSMUST00000121821 636 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm5075-201ENSMUST00000196916 622 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scn5aQ9JJV9 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Gm26524-201ENSMUST00000192339 390 ntBASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Scn5aQ9JJV9 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms