Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lima1Q9ERG0 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lima1Q9ERG0 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.31■□□□□ 0.68
Lima1Q9ERG0 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lima1Q9ERG0 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lima1Q9ERG0 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lima1Q9ERG0 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lima1Q9ERG0 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Lima1Q9ERG0 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Lima1Q9ERG0 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Lima1Q9ERG0 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Lima1Q9ERG0 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Lima1Q9ERG0 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Lima1Q9ERG0 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Lima1Q9ERG0 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Gm7417-201ENSMUST00000192950 473 ntBASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Lima1Q9ERG0 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Gm9959-201ENSMUST00000068277 390 ntBASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Lima1Q9ERG0 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Etf1-202ENSMUST00000180351 108 ntBASIC19.24■□□□□ 0.67
Lima1Q9ERG0 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Lima1Q9ERG0 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms