Protein–RNA interactions for Protein: Q9D2H5

Trim42, Tripartite motif-containing protein 42, mousemouse

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim42Q9D2H5 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Gm10420-201ENSMUST00000121713 882 ntBASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim42Q9D2H5 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim42Q9D2H5 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim42Q9D2H5 Rarb-207ENSMUST00000225921 2756 ntBASIC19.52■□□□□ 0.72
Trim42Q9D2H5 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim42Q9D2H5 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim42Q9D2H5 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim42Q9D2H5 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trim42Q9D2H5 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Gm6802-201ENSMUST00000167843 1983 ntBASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim42Q9D2H5 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.47■□□□□ 0.71
Trim42Q9D2H5 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim42Q9D2H5 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim42Q9D2H5 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim42Q9D2H5 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim42Q9D2H5 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim42Q9D2H5 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim42Q9D2H5 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim42Q9D2H5 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim42Q9D2H5 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim42Q9D2H5 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim42Q9D2H5 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC19.43■□□□□ 0.7
Trim42Q9D2H5 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim42Q9D2H5 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms