Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.83■□□□□ 0.61
Lsm1Q8VC85 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lsm1Q8VC85 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Lsm1Q8VC85 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lsm1Q8VC85 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.83■□□□□ 0.6
Lsm1Q8VC85 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lsm1Q8VC85 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Lsm1Q8VC85 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lsm1Q8VC85 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lsm1Q8VC85 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lsm1Q8VC85 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lsm1Q8VC85 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.8■□□□□ 0.6
Lsm1Q8VC85 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.79■□□□□ 0.6
Lsm1Q8VC85 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lsm1Q8VC85 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lsm1Q8VC85 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.78■□□□□ 0.6
Lsm1Q8VC85 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lsm1Q8VC85 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lsm1Q8VC85 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
Lsm1Q8VC85 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Lsm1Q8VC85 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.77■□□□□ 0.6
Lsm1Q8VC85 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Lsm1Q8VC85 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lsm1Q8VC85 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Gm45102-201ENSMUST00000207427 857 ntBASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 AA386476-201ENSMUST00000098781 1665 ntBASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lsm1Q8VC85 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lsm1Q8VC85 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lsm1Q8VC85 Gm14117-201ENSMUST00000122417 843 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms