Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Gm43530-201ENSMUST00000195920 274 ntBASIC20.69■□□□□ 0.9
Ccdc28aQ8CEI3 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.69■□□□□ 0.9
Ccdc28aQ8CEI3 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc28aQ8CEI3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc28aQ8CEI3 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc28aQ8CEI3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc28aQ8CEI3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc28aQ8CEI3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.67■□□□□ 0.9
Ccdc28aQ8CEI3 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc28aQ8CEI3 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc28aQ8CEI3 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc28aQ8CEI3 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc28aQ8CEI3 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc28aQ8CEI3 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc28aQ8CEI3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc28aQ8CEI3 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc28aQ8CEI3 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.64■□□□□ 0.89
Ccdc28aQ8CEI3 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
Ccdc28aQ8CEI3 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc28aQ8CEI3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc28aQ8CEI3 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc28aQ8CEI3 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.63■□□□□ 0.89
Ccdc28aQ8CEI3 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ccdc28aQ8CEI3 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc28aQ8CEI3 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Gm9870-201ENSMUST00000063874 645 ntBASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc28aQ8CEI3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Ccdc28aQ8CEI3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ccdc28aQ8CEI3 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ccdc28aQ8CEI3 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.58■□□□□ 0.89
Ccdc28aQ8CEI3 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc28aQ8CEI3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
Ccdc28aQ8CEI3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
Ccdc28aQ8CEI3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc28aQ8CEI3 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ccdc28aQ8CEI3 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms