Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim40Q3UWA4 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim40Q3UWA4 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trim40Q3UWA4 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trim40Q3UWA4 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trim40Q3UWA4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trim40Q3UWA4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim40Q3UWA4 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim40Q3UWA4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Trim40Q3UWA4 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Trim40Q3UWA4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Trim40Q3UWA4 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim40Q3UWA4 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim40Q3UWA4 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Nsd1-203ENSMUST00000224156 1149 ntBASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim40Q3UWA4 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim40Q3UWA4 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim40Q3UWA4 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim40Q3UWA4 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms