Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ddb1Q3U1J4 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
Ddb1Q3U1J4 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Ddb1Q3U1J4 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Ddb1Q3U1J4 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
Ddb1Q3U1J4 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
Ddb1Q3U1J4 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Ddb1Q3U1J4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Ddb1Q3U1J4 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC25.25■■□□□ 1.63
Ddb1Q3U1J4 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Ddb1Q3U1J4 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ddb1Q3U1J4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Ddb1Q3U1J4 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Ddb1Q3U1J4 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC25.24■■□□□ 1.63
Ddb1Q3U1J4 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ddb1Q3U1J4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Ddb1Q3U1J4 Gm44672-201ENSMUST00000206944 1098 ntBASIC25.23■■□□□ 1.63
Ddb1Q3U1J4 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ddb1Q3U1J4 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Ddb1Q3U1J4 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
Ddb1Q3U1J4 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ddb1Q3U1J4 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Gm26524-201ENSMUST00000192339 390 ntBASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Ddb1Q3U1J4 Gm42911-201ENSMUST00000199360 1630 ntBASIC25.19■■□□□ 1.62
Ddb1Q3U1J4 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ddb1Q3U1J4 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC25.19■■□□□ 1.62
Ddb1Q3U1J4 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ddb1Q3U1J4 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC25.19■■□□□ 1.62
Ddb1Q3U1J4 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ddb1Q3U1J4 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Ddb1Q3U1J4 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ddb1Q3U1J4 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC25.18■■□□□ 1.62
Ddb1Q3U1J4 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
Ddb1Q3U1J4 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC25.17■■□□□ 1.62
Ddb1Q3U1J4 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Ddb1Q3U1J4 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Ddb1Q3U1J4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ddb1Q3U1J4 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ddb1Q3U1J4 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ddb1Q3U1J4 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Ddb1Q3U1J4 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Gm13836-201ENSMUST00000121159 501 ntBASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Rab3c-203ENSMUST00000224180 967 ntBASIC25.14■■□□□ 1.62
Ddb1Q3U1J4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms