Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Tpm1P58771 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Tpm1P58771 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Tpm1P58771 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Tpm1P58771 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.86■■□□□ 1.09
Tpm1P58771 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.85■■□□□ 1.09
Tpm1P58771 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Tpm1P58771 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Tpm1P58771 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
Tpm1P58771 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Tpm1P58771 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Tpm1P58771 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Tpm1P58771 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.84■■□□□ 1.09
Tpm1P58771 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Tpm1P58771 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Tpm1P58771 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.83■■□□□ 1.09
Tpm1P58771 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.83■■□□□ 1.09
Tpm1P58771 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.83■■□□□ 1.09
Tpm1P58771 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Tpm1P58771 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Tpm1P58771 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Tpm1P58771 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC21.82■■□□□ 1.08
Tpm1P58771 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Tpm1P58771 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Tpm1P58771 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Tpm1P58771 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Tpm1P58771 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Tpm1P58771 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Tpm1P58771 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Tpm1P58771 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Tpm1P58771 AC122335.2-201ENSMUST00000213901 6181 ntBASIC21.8■■□□□ 1.08
Tpm1P58771 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Tpm1P58771 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Tpm1P58771 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Tpm1P58771 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.79■■□□□ 1.08
Tpm1P58771 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.79■■□□□ 1.08
Tpm1P58771 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Tpm1P58771 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.79■■□□□ 1.08
Tpm1P58771 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.78■■□□□ 1.08
Tpm1P58771 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.78■■□□□ 1.08
Tpm1P58771 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Tpm1P58771 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Tpm1P58771 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Tpm1P58771 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Tpm1P58771 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.77■■□□□ 1.08
Tpm1P58771 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Tpm1P58771 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Tpm1P58771 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Tpm1P58771 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Tpm1P58771 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Tpm1P58771 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Tpm1P58771 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Tpm1P58771 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Tpm1P58771 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Tpm1P58771 Golph3-205ENSMUST00000228671 2842 ntBASIC21.75■■□□□ 1.07
Tpm1P58771 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
Tpm1P58771 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Tpm1P58771 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Tpm1P58771 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms