Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prom1O54990 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.82■■□□□ 1.08
Prom1O54990 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prom1O54990 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.82■■□□□ 1.08
Prom1O54990 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.82■■□□□ 1.08
Prom1O54990 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prom1O54990 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prom1O54990 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prom1O54990 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Prom1O54990 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Prom1O54990 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prom1O54990 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prom1O54990 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.81■■□□□ 1.08
Prom1O54990 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Prom1O54990 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prom1O54990 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prom1O54990 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Prom1O54990 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.81■■□□□ 1.08
Prom1O54990 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Prom1O54990 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prom1O54990 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prom1O54990 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Prom1O54990 Snhg20-203ENSMUST00000182811 2153 ntBASIC21.8■■□□□ 1.08
Prom1O54990 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Prom1O54990 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Prom1O54990 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Prom1O54990 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.8■■□□□ 1.08
Prom1O54990 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Prom1O54990 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prom1O54990 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.79■■□□□ 1.08
Prom1O54990 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.79■■□□□ 1.08
Prom1O54990 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prom1O54990 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prom1O54990 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Prom1O54990 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
Prom1O54990 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Gm38205-201ENSMUST00000192243 258 ntBASIC21.78■■□□□ 1.08
Prom1O54990 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.78■■□□□ 1.08
Prom1O54990 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Prom1O54990 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.77■■□□□ 1.08
Prom1O54990 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Prom1O54990 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.77■■□□□ 1.08
Prom1O54990 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Prom1O54990 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Prom1O54990 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.77■■□□□ 1.08
Prom1O54990 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
Prom1O54990 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Prom1O54990 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Prom1O54990 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Prom1O54990 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prom1O54990 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Prom1O54990 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
Prom1O54990 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prom1O54990 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prom1O54990 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Prom1O54990 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Prom1O54990 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Prom1O54990 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Prom1O54990 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.75■■□□□ 1.07
Prom1O54990 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Prom1O54990 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Prom1O54990 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Prom1O54990 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC21.74■■□□□ 1.07
Prom1O54990 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC21.74■■□□□ 1.07
Prom1O54990 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prom1O54990 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Prom1O54990 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Prom1O54990 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Prom1O54990 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.74■■□□□ 1.07
Prom1O54990 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.73■■□□□ 1.07
Prom1O54990 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.73■■□□□ 1.07
Prom1O54990 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Prom1O54990 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.73■■□□□ 1.07
Prom1O54990 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Prom1O54990 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Prom1O54990 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Prom1O54990 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Prom1O54990 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Prom1O54990 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.72■■□□□ 1.07
Prom1O54990 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.72■■□□□ 1.07
Prom1O54990 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.72■■□□□ 1.07
Prom1O54990 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Prom1O54990 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.72■■□□□ 1.07
Prom1O54990 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Prom1O54990 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Prom1O54990 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Prom1O54990 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Prom1O54990 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC21.71■■□□□ 1.07
Prom1O54990 Gm10653-202ENSMUST00000139570 835 ntBASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms