Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.74■□□□□ 0.59
Clk4O35493 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clk4O35493 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Clk4O35493 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.73■□□□□ 0.59
Clk4O35493 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Clk4O35493 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Clk4O35493 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Clk4O35493 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.72■□□□□ 0.59
Clk4O35493 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Clk4O35493 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Clk4O35493 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Clk4O35493 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Clk4O35493 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.71■□□□□ 0.59
Clk4O35493 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Clk4O35493 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.71■□□□□ 0.58
Clk4O35493 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Mir7075-201ENSMUST00000184187 82 ntBASIC18.7■□□□□ 0.58
Clk4O35493 Spcs1-204ENSMUST00000226782 949 ntBASIC18.7■□□□□ 0.58
Clk4O35493 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.7■□□□□ 0.58
Clk4O35493 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Clk4O35493 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Clk4O35493 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.69■□□□□ 0.58
Clk4O35493 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Clk4O35493 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Clk4O35493 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Clk4O35493 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Gm45417-201ENSMUST00000209533 758 ntBASIC18.68■□□□□ 0.58
Clk4O35493 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.68■□□□□ 0.58
Clk4O35493 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Clk4O35493 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Clk4O35493 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Clk4O35493 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk4O35493 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Clk4O35493 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk4O35493 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC18.66■□□□□ 0.58
Clk4O35493 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Clk4O35493 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms