Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clk3O35492 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Clk3O35492 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.6■□□□□ 0.57
Clk3O35492 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.6■□□□□ 0.57
Clk3O35492 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clk3O35492 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.6■□□□□ 0.57
Clk3O35492 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clk3O35492 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clk3O35492 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clk3O35492 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clk3O35492 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clk3O35492 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Clk3O35492 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Clk3O35492 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clk3O35492 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Clk3O35492 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.59■□□□□ 0.57
Clk3O35492 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.59■□□□□ 0.57
Clk3O35492 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clk3O35492 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Clk3O35492 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Clk3O35492 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Clk3O35492 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Clk3O35492 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Clk3O35492 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Clk3O35492 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Clk3O35492 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Clk3O35492 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Clk3O35492 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Clk3O35492 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clk3O35492 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Clk3O35492 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.57■□□□□ 0.56
Clk3O35492 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Clk3O35492 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clk3O35492 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clk3O35492 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clk3O35492 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.57■□□□□ 0.56
Clk3O35492 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clk3O35492 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Clk3O35492 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.56■□□□□ 0.56
Clk3O35492 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.56■□□□□ 0.56
Clk3O35492 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Clk3O35492 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Clk3O35492 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Clk3O35492 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clk3O35492 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clk3O35492 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clk3O35492 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clk3O35492 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Clk3O35492 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Clk3O35492 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.55■□□□□ 0.56
Clk3O35492 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.55■□□□□ 0.56
Clk3O35492 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clk3O35492 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Clk3O35492 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Clk3O35492 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.54■□□□□ 0.56
Clk3O35492 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clk3O35492 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Gm12922-201ENSMUST00000120626 809 ntBASIC18.53■□□□□ 0.56
Clk3O35492 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.53■□□□□ 0.56
Clk3O35492 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Clk3O35492 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Clk3O35492 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.52■□□□□ 0.56
Clk3O35492 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.52■□□□□ 0.56
Clk3O35492 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.52■□□□□ 0.56
Clk3O35492 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clk3O35492 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Clk3O35492 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Clk3O35492 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Clk3O35492 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Clk3O35492 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Clk3O35492 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.51■□□□□ 0.55
Clk3O35492 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Clk3O35492 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.51■□□□□ 0.55
Clk3O35492 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms