Protein–RNA interactions for Protein: A3KGF9

Ccdc9b, Coiled-coil domain-containing protein 9B, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9bA3KGF9 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Ccdc9bA3KGF9 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc9bA3KGF9 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc9bA3KGF9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Gm26833-201ENSMUST00000180899 440 ntBASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Gm37179-201ENSMUST00000194862 823 ntBASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 CT025689.6-201ENSMUST00000224991 1104 ntBASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc9bA3KGF9 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Ccdc9bA3KGF9 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.42
Ccdc9bA3KGF9 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.64■□□□□ 0.42
Ccdc9bA3KGF9 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Gm43759-201ENSMUST00000196925 1261 ntBASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Gm43060-201ENSMUST00000200621 289 ntBASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc9bA3KGF9 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc9bA3KGF9 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC17.62■□□□□ 0.41
Ccdc9bA3KGF9 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Ccdc9bA3KGF9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9bA3KGF9 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9bA3KGF9 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Ccdc9bA3KGF9 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms