Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav16d-dv11A0A075B617 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Gm11687-201ENSMUST00000118911 886 ntBASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav16d-dv11A0A075B617 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Gm11847-201ENSMUST00000125165 1119 ntBASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Trav16d-dv11A0A075B617 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Trav16d-dv11A0A075B617 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Trav16d-dv11A0A075B617 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav16d-dv11A0A075B617 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms