Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Cfap61-204ENSMUST00000126415 2256 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cux1P53564 AC122858.2-201ENSMUST00000228571 1362 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC15.26■□□□□ 0.03
Cux1P53564 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Cyp2e1-201ENSMUST00000026552 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Rnf6-206ENSMUST00000161859 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Tnip1-203ENSMUST00000102731 2973 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Ilf3-208ENSMUST00000214758 3177 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 AC154729.1-201ENSMUST00000224481 1501 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Ccnb1ip1-201ENSMUST00000095932 1509 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Gosr2-201ENSMUST00000021329 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Mblac2-201ENSMUST00000057598 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Gm13675-201ENSMUST00000120616 529 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Gm9855-201ENSMUST00000121229 1194 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Gm14439-201ENSMUST00000122320 441 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Gm3261-201ENSMUST00000166886 481 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Mir6930-201ENSMUST00000183859 68 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Mir6965-201ENSMUST00000184733 64 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Gm29323-201ENSMUST00000189792 332 ntTSL 3 BASIC15.26■□□□□ 0.03
Cux1P53564 Gm42620-201ENSMUST00000197715 630 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Gm42538-202ENSMUST00000199431 358 ntTSL 3 BASIC15.26■□□□□ 0.03
Cux1P53564 Gm42931-201ENSMUST00000201009 760 ntTSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Olfr371-202ENSMUST00000218663 1162 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Gm35412-201ENSMUST00000220437 999 ntBASIC15.26■□□□□ 0.03
Cux1P53564 Gm36495-201ENSMUST00000221201 684 ntTSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Cst13-201ENSMUST00000046589 783 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC15.26■□□□□ 0.03
Cux1P53564 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Cstf1-201ENSMUST00000116375 3451 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cux1P53564 Cdh8-205ENSMUST00000142475 3216 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Nde1-202ENSMUST00000115795 2335 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Rad54b-201ENSMUST00000070755 2870 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Gm28533-202ENSMUST00000190106 1346 ntTSL 5 BASIC15.25■□□□□ 0.03
Cux1P53564 Sox2ot-210ENSMUST00000197697 2533 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Kcnip4-206ENSMUST00000175660 2394 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Cux1P53564 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Olfr409-ps1-201ENSMUST00000118809 971 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Cux1P53564 Gm14983-201ENSMUST00000121551 323 ntBASIC15.25■□□□□ 0.03
Cux1P53564 4921509A06Rik-201ENSMUST00000171278 392 ntTSL 3 BASIC15.25■□□□□ 0.03
Cux1P53564 Ang-202ENSMUST00000171688 728 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Mir3093-201ENSMUST00000175247 87 ntBASIC15.25■□□□□ 0.03
Cux1P53564 AI506816-201ENSMUST00000197153 474 ntTSL 5 BASIC15.25■□□□□ 0.03
Cux1P53564 Gm45047-201ENSMUST00000207651 309 ntBASIC15.25■□□□□ 0.03
Cux1P53564 AC165260.2-202ENSMUST00000224998 631 ntBASIC15.25■□□□□ 0.03
Cux1P53564 Nps-201ENSMUST00000097983 840 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Cux1P53564 Olfr550-201ENSMUST00000098225 1038 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Cux1P53564 Ptcd1-201ENSMUST00000031628 3087 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Gulo-201ENSMUST00000059970 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 AC115891.2-201ENSMUST00000218448 1341 ntBASIC15.25■□□□□ 0.03
Cux1P53564 Xlr4b-202ENSMUST00000069103 1304 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Cux1P53564 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Hip1-210ENSMUST00000212301 1625 ntTSL 5 BASIC15.25■□□□□ 0.03
Cux1P53564 Nt5c1b-211ENSMUST00000218339 1843 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Cux1P53564 Nt5c1b-201ENSMUST00000002456 1849 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Plscr2-205ENSMUST00000180154 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Saxo2-205ENSMUST00000207693 1927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cux1P53564 Gm45089-201ENSMUST00000208082 2040 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Gm34280-201ENSMUST00000208250 2114 ntTSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Slc1a2-201ENSMUST00000005220 2127 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Gm37459-201ENSMUST00000192259 2840 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Rd3-202ENSMUST00000180463 3724 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 4932702P03Rik-202ENSMUST00000151220 2792 ntTSL 2 BASIC15.24■□□□□ 0.03
Cux1P53564 Dyrk1a-203ENSMUST00000122284 2356 ntTSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Dnmt3l-ps1-201ENSMUST00000118734 1253 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Gm11225-201ENSMUST00000118903 1049 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Vmn1r-ps114-201ENSMUST00000121050 1040 ntBASIC15.24■□□□□ 0.03
Cux1P53564 1700112D23Rik-201ENSMUST00000167704 546 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Gm18513-201ENSMUST00000177313 560 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Gm37559-201ENSMUST00000193556 832 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Gm30873-201ENSMUST00000207512 1222 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Gm30619-201ENSMUST00000213962 686 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Cd24a-202ENSMUST00000214476 743 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
Cux1P53564 AC164612.2-201ENSMUST00000215737 719 ntTSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Gm9662-201ENSMUST00000216748 1206 ntBASIC15.24■□□□□ 0.03
Cux1P53564 AC160109.1-201ENSMUST00000225592 729 ntBASIC15.24■□□□□ 0.03
Cux1P53564 AC126939.2-201ENSMUST00000225989 307 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Wfdc12-201ENSMUST00000051272 775 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Olfr533-201ENSMUST00000071755 1052 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Cux1P53564 Gm826-201ENSMUST00000099127 637 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Catspere1-201ENSMUST00000194528 2949 ntBASIC15.24■□□□□ 0.03
Cux1P53564 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Pde9a-206ENSMUST00000134525 1818 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Cux1P53564 Crx-204ENSMUST00000174318 2880 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Akr1cl-206ENSMUST00000162800 1628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 Cyp4a12b-201ENSMUST00000094887 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cux1P53564 A530006G24Rik-201ENSMUST00000152542 1331 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms