Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm10406-201ENSMUST00000100895 1813 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 Sgk3-204ENSMUST00000171265 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Adh1-201ENSMUST00000004232 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Ilf3-201ENSMUST00000067646 3549 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 Fhl1-202ENSMUST00000114768 1337 ntTSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 BC051665-201ENSMUST00000026078 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Doxl2-203ENSMUST00000184917 2468 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Traf1P39428 Bcl2l11-201ENSMUST00000019281 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 H2-T3-204ENSMUST00000102675 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Slc7a1-201ENSMUST00000048116 7179 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Pzp-201ENSMUST00000112132 4681 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Traf1P39428 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC11.8□□□□□ -0.52
Traf1P39428 AC107763.1-201ENSMUST00000226082 1365 ntBASIC11.79□□□□□ -0.52
Traf1P39428 Gba-201ENSMUST00000077367 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Elf2-213ENSMUST00000195432 2161 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 A1cf-201ENSMUST00000075838 2989 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Grb10-202ENSMUST00000109653 2048 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Klk13-201ENSMUST00000066834 1809 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Setmar-201ENSMUST00000049246 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Eddm3b-201ENSMUST00000100645 1412 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Creb3l4-202ENSMUST00000107369 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Pnma2-201ENSMUST00000089236 5518 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
Traf1P39428 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Gm30504-201ENSMUST00000209316 1688 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Mical1-203ENSMUST00000119962 3565 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Mir181d-201ENSMUST00000102383 72 ntBASIC11.79□□□□□ -0.52
Traf1P39428 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 4921508D12Rik-201ENSMUST00000124095 1075 ntTSL 2 BASIC11.79□□□□□ -0.52
Traf1P39428 Gm13554-201ENSMUST00000137349 477 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 2410152P15Rik-201ENSMUST00000137405 871 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Gm15472-201ENSMUST00000141652 847 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Gm16033-201ENSMUST00000144915 596 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Gm26174-201ENSMUST00000158415 219 ntBASIC11.79□□□□□ -0.52
Traf1P39428 Mir7088-201ENSMUST00000184227 86 ntBASIC11.79□□□□□ -0.52
Traf1P39428 1810018F18Rik-201ENSMUST00000188253 277 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Ighv5-12-4-201ENSMUST00000195381 353 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Traf1P39428 Gm29689-201ENSMUST00000221076 589 ntBASIC11.79□□□□□ -0.52
Traf1P39428 Gm34667-201ENSMUST00000222974 1258 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Gm36287-201ENSMUST00000223481 796 ntTSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Prss1-201ENSMUST00000031910 805 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Olfr1384-201ENSMUST00000060434 1034 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Traf1P39428 Kcng4-201ENSMUST00000061828 3806 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Tex11-202ENSMUST00000113716 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Lrrn4cl-201ENSMUST00000096257 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Nlrx1-201ENSMUST00000034621 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Gm11497-201ENSMUST00000138295 2154 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Cdc6-201ENSMUST00000092706 4614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Lmo3-207ENSMUST00000163065 2425 ntTSL 3 BASIC11.79□□□□□ -0.52
Traf1P39428 Gm38910-201ENSMUST00000204630 2448 ntBASIC11.79□□□□□ -0.52
Traf1P39428 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Traf1P39428 Fcrla-203ENSMUST00000159171 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Pold1-201ENSMUST00000049343 3454 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Traf1P39428 Phf8-203ENSMUST00000112662 3732 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Cux1-211ENSMUST00000176745 2831 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Meox2-201ENSMUST00000041183 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Ptk2b-203ENSMUST00000111121 3365 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Ank1-206ENSMUST00000117662 6257 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Gm28578-203ENSMUST00000189196 1470 ntTSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 AC154575.1-201ENSMUST00000227166 1474 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Ppp4r1-204ENSMUST00000160664 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Timm10b-203ENSMUST00000106783 3273 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Gm15132-201ENSMUST00000118581 652 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Gm3880-201ENSMUST00000122154 337 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 4930529I22Rik-201ENSMUST00000131509 589 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Gm16252-201ENSMUST00000144420 857 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 0610040B10Rik-202ENSMUST00000162890 600 ntTSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Sectm1b-206ENSMUST00000168459 1075 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Gm27826-201ENSMUST00000175282 255 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Gm20474-201ENSMUST00000180089 596 ntBASIC11.78□□□□□ -0.52
Traf1P39428 6030460B20Rik-201ENSMUST00000191764 1058 ntBASIC11.78□□□□□ -0.52
Traf1P39428 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Gm43106-201ENSMUST00000199485 637 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Gm44917-201ENSMUST00000208798 520 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Gm18646-201ENSMUST00000212240 1063 ntBASIC11.78□□□□□ -0.52
Traf1P39428 AC153512.3-201ENSMUST00000220426 662 ntTSL 3 BASIC11.78□□□□□ -0.52
Traf1P39428 Clrn1-201ENSMUST00000051408 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Gm8991-201ENSMUST00000073014 1075 ntBASIC11.78□□□□□ -0.52
Traf1P39428 n-R5s25-201ENSMUST00000082923 119 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Hps4-202ENSMUST00000112359 3345 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 Gm38025-201ENSMUST00000193926 2308 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC11.78□□□□□ -0.52
Traf1P39428 Sec31b-201ENSMUST00000063632 3939 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Traf1P39428 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Tyro3-202ENSMUST00000110783 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Sap30bpos-201ENSMUST00000132264 2352 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Astn1-205ENSMUST00000193042 7248 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 P2rx7-201ENSMUST00000031425 1605 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Traf1P39428 Acadsb-202ENSMUST00000117518 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms