Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Snrnp27-201ENSMUST00000001186 885 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Gm12377-201ENSMUST00000118656 252 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm6500-201ENSMUST00000119412 451 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Rnasek-203ENSMUST00000141880 465 ntTSL 2 BASIC11.88□□□□□ -0.51
Traf1P39428 Gm12737-201ENSMUST00000142835 725 ntTSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 D430040D24Rik-201ENSMUST00000149224 910 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Gm13842-202ENSMUST00000156331 865 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC11.88□□□□□ -0.51
Traf1P39428 Gm5873-201ENSMUST00000177157 1066 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm2345-201ENSMUST00000193451 589 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm42687-201ENSMUST00000199075 164 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm43726-201ENSMUST00000199110 775 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm18862-201ENSMUST00000204643 933 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm45527-201ENSMUST00000211052 774 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gm45846-201ENSMUST00000211170 446 ntTSL 2 BASIC11.88□□□□□ -0.51
Traf1P39428 1700029N11Rik-203ENSMUST00000220639 1092 ntTSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 2210010C04Rik-201ENSMUST00000031931 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Ttc23-203ENSMUST00000107471 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 AC125351.1-201ENSMUST00000221438 2223 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Tnk2-207ENSMUST00000115126 4358 ntTSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 Klk1b26-201ENSMUST00000048945 1386 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Ubash3a-201ENSMUST00000048656 2945 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Gm44445-201ENSMUST00000204075 2683 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Gys1-206ENSMUST00000211150 2681 ntTSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 Nemp2-201ENSMUST00000165859 3396 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Traf1P39428 Casc1-208ENSMUST00000204105 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Efna1-201ENSMUST00000029566 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Ankrd46-201ENSMUST00000057486 2509 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC11.88□□□□□ -0.51
Traf1P39428 Lrpap1-201ENSMUST00000030986 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Traf1P39428 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC11.87□□□□□ -0.51
Traf1P39428 Pex26-203ENSMUST00000120066 3861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Rasgef1a-203ENSMUST00000203804 2183 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Serpinb6b-203ENSMUST00000164541 1719 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Stox2-206ENSMUST00000210030 2734 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Gm6755-201ENSMUST00000100598 864 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm6740-201ENSMUST00000100617 864 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Masp2-202ENSMUST00000105701 738 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Klrc2-202ENSMUST00000112057 1149 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Gm14853-201ENSMUST00000116081 549 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm11473-201ENSMUST00000118980 359 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Maats1os-201ENSMUST00000133496 326 ntTSL 3 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm12254-201ENSMUST00000134617 471 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Zfp961-204ENSMUST00000136516 601 ntTSL 2 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm11521-201ENSMUST00000143302 329 ntTSL 3 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm1758-201ENSMUST00000164528 606 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Traf1P39428 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Gm19668-201ENSMUST00000178581 747 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm28391-201ENSMUST00000185202 379 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm6644-201ENSMUST00000186507 951 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm29528-201ENSMUST00000186699 379 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm29526-201ENSMUST00000187217 379 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm38004-201ENSMUST00000192972 357 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm9409-201ENSMUST00000197017 316 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm43117-201ENSMUST00000198531 379 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm17936-201ENSMUST00000199413 988 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm19121-201ENSMUST00000215720 1022 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Gm2696-201ENSMUST00000220062 723 ntAPPRIS P5 BASIC11.87□□□□□ -0.51
Traf1P39428 AC163638.2-201ENSMUST00000224920 827 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Tctex1d1-201ENSMUST00000030248 977 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Crip1-201ENSMUST00000006523 445 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Gm9701-201ENSMUST00000077976 427 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm26822-201ENSMUST00000181732 3374 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Vgll3-202ENSMUST00000227997 1383 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Traf1P39428 Fbxl5-202ENSMUST00000087465 4237 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Phf8-202ENSMUST00000046962 3105 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Lipg-201ENSMUST00000066532 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Tro-201ENSMUST00000087253 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Olfr543-202ENSMUST00000219647 1456 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Traf1P39428 Ttc16-206ENSMUST00000161430 2874 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Tmprss2-201ENSMUST00000000395 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Csgalnact1-201ENSMUST00000078350 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 CT009601.1-201ENSMUST00000225567 2705 ntBASIC11.87□□□□□ -0.51
Traf1P39428 Zfp324-201ENSMUST00000038701 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Dclk1-213ENSMUST00000199702 2922 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Traf1P39428 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Gsg1-204ENSMUST00000111911 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Ccdc130-201ENSMUST00000005120 1441 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Traf1P39428 Pomgnt1-204ENSMUST00000120083 2953 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Traf1P39428 Gm45728-201ENSMUST00000211475 2979 ntBASIC11.86□□□□□ -0.51
Traf1P39428 Tmem56-207ENSMUST00000155309 2230 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Abhd4-201ENSMUST00000041197 2401 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
Traf1P39428 Elf5-206ENSMUST00000164172 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms