Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ushbp1Q8R370 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ushbp1Q8R370 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Ushbp1Q8R370 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Ushbp1Q8R370 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ushbp1Q8R370 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Ushbp1Q8R370 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC22.14■■□□□ 1.13
Ushbp1Q8R370 Krt8-ps-201ENSMUST00000208495 945 ntBASIC22.14■■□□□ 1.13
Ushbp1Q8R370 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ushbp1Q8R370 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Ushbp1Q8R370 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Gm43909-201ENSMUST00000203443 1876 ntBASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Ushbp1Q8R370 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 AC164629.5-201ENSMUST00000220387 632 ntBASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Ushbp1Q8R370 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ushbp1Q8R370 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Ushbp1Q8R370 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ushbp1Q8R370 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC22.11■■□□□ 1.13
Ushbp1Q8R370 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC22.11■■□□□ 1.13
Ushbp1Q8R370 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Ushbp1Q8R370 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ushbp1Q8R370 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
Ushbp1Q8R370 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Ushbp1Q8R370 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Ushbp1Q8R370 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ushbp1Q8R370 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Ushbp1Q8R370 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Gm8493-201ENSMUST00000196881 489 ntBASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Ushbp1Q8R370 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ushbp1Q8R370 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Ushbp1Q8R370 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ushbp1Q8R370 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ushbp1Q8R370 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
Ushbp1Q8R370 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Ushbp1Q8R370 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC22.08■■□□□ 1.12
Ushbp1Q8R370 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Ushbp1Q8R370 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ushbp1Q8R370 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC22.07■■□□□ 1.12
Ushbp1Q8R370 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ushbp1Q8R370 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC22.07■■□□□ 1.12
Ushbp1Q8R370 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Ushbp1Q8R370 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ushbp1Q8R370 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Gm5874-201ENSMUST00000096101 508 ntBASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Ushbp1Q8R370 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ushbp1Q8R370 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Ushbp1Q8R370 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ushbp1Q8R370 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ushbp1Q8R370 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC22.05■■□□□ 1.12
Ushbp1Q8R370 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ushbp1Q8R370 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Ushbp1Q8R370 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Ushbp1Q8R370 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC22.04■■□□□ 1.12
Ushbp1Q8R370 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ushbp1Q8R370 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC22.04■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms