Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ccdc28bQ8CEG5 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28bQ8CEG5 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28bQ8CEG5 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28bQ8CEG5 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ccdc28bQ8CEG5 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Ccdc28bQ8CEG5 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ccdc28bQ8CEG5 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ccdc28bQ8CEG5 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.42■□□□□ 0.7
Ccdc28bQ8CEG5 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc28bQ8CEG5 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc28bQ8CEG5 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
Ccdc28bQ8CEG5 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc28bQ8CEG5 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc28bQ8CEG5 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.37■□□□□ 0.69
Ccdc28bQ8CEG5 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms