Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC22.7■■□□□ 1.22
Ddx55Q6ZPL9 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Gm22240-201ENSMUST00000175225 82 ntBASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Ddx55Q6ZPL9 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx55Q6ZPL9 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx55Q6ZPL9 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC22.68■■□□□ 1.22
Ddx55Q6ZPL9 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Ddx55Q6ZPL9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Ddx55Q6ZPL9 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Gm7290-201ENSMUST00000104990 617 ntBASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Gm12918-201ENSMUST00000120234 636 ntBASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Gm15710-201ENSMUST00000121821 636 ntBASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Gm5075-201ENSMUST00000196916 622 ntBASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ddx55Q6ZPL9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Gm43859-201ENSMUST00000200075 1412 ntBASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ddx55Q6ZPL9 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx55Q6ZPL9 Gm38205-201ENSMUST00000192243 258 ntBASIC22.65■■□□□ 1.22
Ddx55Q6ZPL9 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx55Q6ZPL9 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx55Q6ZPL9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ddx55Q6ZPL9 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddx55Q6ZPL9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Ddx55Q6ZPL9 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Ddx55Q6ZPL9 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Gm6365-201ENSMUST00000054711 744 ntBASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Ddx55Q6ZPL9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Gm8520-201ENSMUST00000186517 868 ntBASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ddx55Q6ZPL9 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Gm10252-201ENSMUST00000209541 832 ntBASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
Ddx55Q6ZPL9 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
Ddx55Q6ZPL9 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC22.6■■□□□ 1.21
Ddx55Q6ZPL9 Gm5408-201ENSMUST00000197998 747 ntBASIC22.6■■□□□ 1.21
Ddx55Q6ZPL9 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Ddx55Q6ZPL9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ddx55Q6ZPL9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
Ddx55Q6ZPL9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC22.59■■□□□ 1.21
Ddx55Q6ZPL9 Gm6420-201ENSMUST00000193885 723 ntBASIC22.59■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms