Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Scaf4Q6PFF0 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Scaf4Q6PFF0 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Mir6236-201ENSMUST00000184437 123 ntBASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Scaf4Q6PFF0 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scaf4Q6PFF0 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scaf4Q6PFF0 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.42■□□□□ 0.7
Scaf4Q6PFF0 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scaf4Q6PFF0 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scaf4Q6PFF0 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Scaf4Q6PFF0 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scaf4Q6PFF0 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Scaf4Q6PFF0 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Scaf4Q6PFF0 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scaf4Q6PFF0 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Gm10232-201ENSMUST00000089221 720 ntBASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scaf4Q6PFF0 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms