Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 CT025689.6-201ENSMUST00000224991 1104 ntBASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Shkbp1Q6P7W2 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
Shkbp1Q6P7W2 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shkbp1Q6P7W2 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shkbp1Q6P7W2 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shkbp1Q6P7W2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Shkbp1Q6P7W2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shkbp1Q6P7W2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shkbp1Q6P7W2 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shkbp1Q6P7W2 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Shkbp1Q6P7W2 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shkbp1Q6P7W2 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shkbp1Q6P7W2 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.63■□□□□ 0.89
Shkbp1Q6P7W2 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shkbp1Q6P7W2 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shkbp1Q6P7W2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Shkbp1Q6P7W2 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Gm7514-201ENSMUST00000209475 934 ntBASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Gm10602-201ENSMUST00000098239 609 ntBASIC20.61■□□□□ 0.89
Shkbp1Q6P7W2 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Gm12933-201ENSMUST00000120203 872 ntBASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shkbp1Q6P7W2 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Gm27011-201ENSMUST00000182352 972 ntBASIC20.59■□□□□ 0.89
Shkbp1Q6P7W2 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 169.6 ms