Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nr1h4Q60641 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.77■□□□□ 0.6
Nr1h4Q60641 Gm10232-201ENSMUST00000089221 720 ntBASIC18.77■□□□□ 0.6
Nr1h4Q60641 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Nr1h4Q60641 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Nr1h4Q60641 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Nr1h4Q60641 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Nr1h4Q60641 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Nr1h4Q60641 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.76■□□□□ 0.59
Nr1h4Q60641 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Nr1h4Q60641 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Nr1h4Q60641 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Nr1h4Q60641 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Nr1h4Q60641 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Nr1h4Q60641 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.75■□□□□ 0.59
Nr1h4Q60641 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Nr1h4Q60641 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Nr1h4Q60641 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nr1h4Q60641 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nr1h4Q60641 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nr1h4Q60641 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.69■□□□□ 0.58
Nr1h4Q60641 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nr1h4Q60641 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Nr1h4Q60641 Hsf1-204ENSMUST00000226872 2104 ntBASIC18.68■□□□□ 0.58
Nr1h4Q60641 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Nr1h4Q60641 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms