Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Ccl3P10855 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccl3P10855 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Ccl3P10855 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.54■□□□□ 0.4
Ccl3P10855 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.54■□□□□ 0.4
Ccl3P10855 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.54■□□□□ 0.4
Ccl3P10855 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Ccl3P10855 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccl3P10855 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Ccl3P10855 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccl3P10855 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccl3P10855 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccl3P10855 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.53■□□□□ 0.4
Ccl3P10855 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccl3P10855 Gm12441-201ENSMUST00000121806 588 ntBASIC17.53■□□□□ 0.4
Ccl3P10855 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.53■□□□□ 0.4
Ccl3P10855 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.52■□□□□ 0.4
Ccl3P10855 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccl3P10855 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Ccl3P10855 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Ccl3P10855 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.52■□□□□ 0.39
Ccl3P10855 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccl3P10855 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccl3P10855 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ccl3P10855 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccl3P10855 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccl3P10855 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.51■□□□□ 0.39
Ccl3P10855 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.51■□□□□ 0.39
Ccl3P10855 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccl3P10855 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccl3P10855 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ccl3P10855 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
Ccl3P10855 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccl3P10855 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.5■□□□□ 0.39
Ccl3P10855 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Ccl3P10855 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccl3P10855 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Ccl3P10855 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccl3P10855 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccl3P10855 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Ccl3P10855 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccl3P10855 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccl3P10855 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccl3P10855 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Ccl3P10855 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ccl3P10855 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Ccl3P10855 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.49■□□□□ 0.39
Ccl3P10855 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.49■□□□□ 0.39
Ccl3P10855 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
Ccl3P10855 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccl3P10855 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Ccl3P10855 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccl3P10855 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccl3P10855 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Ccl3P10855 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Ccl3P10855 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Ccl3P10855 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Ccl3P10855 Gm13146-201ENSMUST00000118508 780 ntBASIC17.47■□□□□ 0.39
Ccl3P10855 Nespas-201ENSMUST00000143738 1083 ntBASIC17.47■□□□□ 0.39
Ccl3P10855 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Ccl3P10855 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Ccl3P10855 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccl3P10855 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccl3P10855 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Ccl3P10855 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Ccl3P10855 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
Ccl3P10855 Gm10653-202ENSMUST00000139570 835 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms