Protein–RNA interactions for Protein: O88338

Cdh16, Cadherin-16, mousemouse

Predictions only

Length 830 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh16O88338 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Cdh16O88338 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdh16O88338 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh16O88338 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.24■□□□□ 0.67
Cdh16O88338 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.24■□□□□ 0.67
Cdh16O88338 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh16O88338 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh16O88338 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh16O88338 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdh16O88338 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.23■□□□□ 0.67
Cdh16O88338 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdh16O88338 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Cdh16O88338 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.22■□□□□ 0.67
Cdh16O88338 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cdh16O88338 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC19.22■□□□□ 0.67
Cdh16O88338 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Cdh16O88338 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cdh16O88338 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh16O88338 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh16O88338 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh16O88338 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.21■□□□□ 0.67
Cdh16O88338 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh16O88338 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdh16O88338 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Cdh16O88338 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Rarb-207ENSMUST00000225921 2756 ntBASIC19.2■□□□□ 0.66
Cdh16O88338 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdh16O88338 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC19.2■□□□□ 0.66
Cdh16O88338 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.19■□□□□ 0.66
Cdh16O88338 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.19■□□□□ 0.66
Cdh16O88338 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Cdh16O88338 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.19■□□□□ 0.66
Cdh16O88338 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdh16O88338 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Cdh16O88338 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cdh16O88338 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.18■□□□□ 0.66
Cdh16O88338 Gm45444-201ENSMUST00000211394 898 ntBASIC19.18■□□□□ 0.66
Cdh16O88338 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Cdh16O88338 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.18■□□□□ 0.66
Cdh16O88338 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cdh16O88338 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Cdh16O88338 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cdh16O88338 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Cdh16O88338 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.18■□□□□ 0.66
Cdh16O88338 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdh16O88338 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Cdh16O88338 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdh16O88338 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Cdh16O88338 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Cdh16O88338 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms