Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.11■□□□□ 0.49
Col5a1O88207 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Col5a1O88207 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC18.11■□□□□ 0.49
Col5a1O88207 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col5a1O88207 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC18.1■□□□□ 0.49
Col5a1O88207 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Col5a1O88207 Gm9988-201ENSMUST00000069786 435 ntBASIC18.1■□□□□ 0.49
Col5a1O88207 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col5a1O88207 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col5a1O88207 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC18.09■□□□□ 0.49
Col5a1O88207 Mir5133-201ENSMUST00000174955 77 ntBASIC18.09■□□□□ 0.49
Col5a1O88207 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.09■□□□□ 0.49
Col5a1O88207 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Col5a1O88207 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
Col5a1O88207 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.09■□□□□ 0.49
Col5a1O88207 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Col5a1O88207 Gm13234-201ENSMUST00000120010 747 ntBASIC18.09■□□□□ 0.49
Col5a1O88207 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Col5a1O88207 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col5a1O88207 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col5a1O88207 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col5a1O88207 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Col5a1O88207 Gm8520-201ENSMUST00000186517 868 ntBASIC18.08■□□□□ 0.48
Col5a1O88207 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.08■□□□□ 0.48
Col5a1O88207 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col5a1O88207 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col5a1O88207 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col5a1O88207 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col5a1O88207 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Col5a1O88207 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Col5a1O88207 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.07■□□□□ 0.48
Col5a1O88207 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.07■□□□□ 0.48
Col5a1O88207 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Col5a1O88207 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.07■□□□□ 0.48
Col5a1O88207 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Col5a1O88207 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.07■□□□□ 0.48
Col5a1O88207 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.07■□□□□ 0.48
Col5a1O88207 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.07■□□□□ 0.48
Col5a1O88207 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Col5a1O88207 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col5a1O88207 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col5a1O88207 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Col5a1O88207 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.05■□□□□ 0.48
Col5a1O88207 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC18.05■□□□□ 0.48
Col5a1O88207 Reep4-203ENSMUST00000226563 1444 ntBASIC18.05■□□□□ 0.48
Col5a1O88207 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.05■□□□□ 0.48
Col5a1O88207 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Col5a1O88207 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Col5a1O88207 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Col5a1O88207 Gm13168-201ENSMUST00000121771 632 ntBASIC18.04■□□□□ 0.48
Col5a1O88207 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Col5a1O88207 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Col5a1O88207 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col5a1O88207 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Col5a1O88207 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.03■□□□□ 0.48
Col5a1O88207 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
Col5a1O88207 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Col5a1O88207 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col5a1O88207 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col5a1O88207 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Col5a1O88207 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col5a1O88207 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms