Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
Cdx2P43241 4930455D15Rik-201ENSMUST00000181632 1616 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Setmar-201ENSMUST00000049246 1612 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Dmbx1-203ENSMUST00000124071 4017 ntAPPRIS P2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC9.84□□□□□ -0.83
Cdx2P43241 Ttc39a-202ENSMUST00000106618 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Vgll3-202ENSMUST00000227997 1383 ntBASIC9.84□□□□□ -0.83
Cdx2P43241 Gm11231-201ENSMUST00000117895 1706 ntBASIC9.84□□□□□ -0.83
Cdx2P43241 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC9.84□□□□□ -0.83
Cdx2P43241 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Acvr1-203ENSMUST00000112599 2891 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
Cdx2P43241 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Baat-201ENSMUST00000043056 1941 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC9.84□□□□□ -0.83
Cdx2P43241 Limd1-201ENSMUST00000026269 4848 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Cdx2P43241 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm28453-201ENSMUST00000185556 1323 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
Cdx2P43241 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm42974-201ENSMUST00000199556 2654 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Msh3-201ENSMUST00000022220 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Cdcp2-201ENSMUST00000062495 2611 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm31763-202ENSMUST00000218205 1724 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Tmem254c-201ENSMUST00000100818 1066 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Ifna5-201ENSMUST00000102804 570 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Cdx2P43241 Masp2-202ENSMUST00000105701 738 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Mkrn2os-202ENSMUST00000112957 964 ntAPPRIS P1 TSL 2 BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm5054-201ENSMUST00000119351 453 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Gm15798-201ENSMUST00000120082 408 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Gm15727-201ENSMUST00000122416 437 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 4933439K11Rik-202ENSMUST00000140307 941 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm13629-201ENSMUST00000141149 1022 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm11608-202ENSMUST00000153049 877 ntTSL 3 BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm20455-201ENSMUST00000174100 1138 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm37819-201ENSMUST00000194626 1065 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Gm38321-201ENSMUST00000195053 235 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Gm34397-201ENSMUST00000213192 708 ntTSL 3 BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC9.83□□□□□ -0.84
Cdx2P43241 3830406C13Rik-205ENSMUST00000223702 900 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 AC116797.2-203ENSMUST00000225290 565 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Pdha2-201ENSMUST00000057860 2352 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Cdx2P43241 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
Cdx2P43241 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC9.83□□□□□ -0.84
Cdx2P43241 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Pck2-207ENSMUST00000226519 4625 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Cdx2P43241 Acp1-202ENSMUST00000074038 2754 ntAPPRIS ALT1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 CT009713.3-201ENSMUST00000224987 1565 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Pde6c-202ENSMUST00000112329 2895 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm9035-201ENSMUST00000218318 1697 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Rab7b-201ENSMUST00000064664 1672 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC9.83□□□□□ -0.84
Cdx2P43241 Gm17281-201ENSMUST00000180732 3589 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Cdx2P43241 AU015228-201ENSMUST00000121103 1320 ntBASIC9.82□□□□□ -0.84
Cdx2P43241 AC129336.1-201ENSMUST00000220224 2277 ntBASIC9.82□□□□□ -0.84
Cdx2P43241 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Flcn-203ENSMUST00000102697 3437 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Rnf216-201ENSMUST00000053498 4474 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Gm15535-202ENSMUST00000148478 1519 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Tuft1-204ENSMUST00000196733 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC9.82□□□□□ -0.84
Cdx2P43241 Gpr39-201ENSMUST00000027581 2691 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC9.82□□□□□ -0.84
Cdx2P43241 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.84
Cdx2P43241 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC9.82□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms