Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Gm37648-201ENSMUST00000192072 2563 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Sun1-205ENSMUST00000110883 3714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Exosc9-201ENSMUST00000029269 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Dph5-202ENSMUST00000106505 1836 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Adat1-201ENSMUST00000034427 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Gm22751-201ENSMUST00000102077 109 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Mir692-3-201ENSMUST00000102079 109 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Mir692-2-201ENSMUST00000102081 109 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Ighv7-1-201ENSMUST00000103474 363 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Traf1P39428 Guca2b-202ENSMUST00000106309 697 ntAPPRIS ALT2 TSL 3 BASIC12.05□□□□□ -0.48
Traf1P39428 Pex5l-203ENSMUST00000108221 1187 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Zbp1-202ENSMUST00000109116 770 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Gm16263-201ENSMUST00000144680 502 ntTSL 3 BASIC12.05□□□□□ -0.48
Traf1P39428 Gm7805-201ENSMUST00000154348 448 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Gm24078-201ENSMUST00000158184 103 ntBASIC12.05□□□□□ -0.48
Traf1P39428 4930524O07Rik-202ENSMUST00000162334 293 ntTSL 2 BASIC12.05□□□□□ -0.48
Traf1P39428 Erg-209ENSMUST00000177450 1280 ntTSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Gm6069-201ENSMUST00000196501 463 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Gm43854-201ENSMUST00000200418 394 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Gm6426-201ENSMUST00000209048 854 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Pigx-212ENSMUST00000215073 765 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 AC134860.5-201ENSMUST00000225071 1249 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Rpl9-201ENSMUST00000057885 738 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Amz1-202ENSMUST00000120630 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Pfkfb3-215ENSMUST00000183869 1478 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Bicd2-202ENSMUST00000110084 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Cep250-201ENSMUST00000039994 7979 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 D630029K05Rik-201ENSMUST00000033651 2133 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 CN725425-201ENSMUST00000109284 1929 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Traf1P39428 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC12.05□□□□□ -0.48
Traf1P39428 AC108416.1-201ENSMUST00000228755 1558 ntBASIC12.05□□□□□ -0.48
Traf1P39428 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC12.05□□□□□ -0.48
Traf1P39428 B630019A10Rik-201ENSMUST00000149488 2407 ntTSL 2 BASIC12.05□□□□□ -0.48
Traf1P39428 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Sel1l-201ENSMUST00000021347 6300 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Gm42731-201ENSMUST00000201839 1641 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Tial1-202ENSMUST00000106226 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 AC166361.2-201ENSMUST00000219269 1415 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Rnf121-203ENSMUST00000106953 2545 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 CT868720.1-201ENSMUST00000223069 2544 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Klhl7-201ENSMUST00000030841 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Gm21115-201ENSMUST00000187565 2578 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Traf1P39428 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC12.04□□□□□ -0.48
Traf1P39428 Psme2-201ENSMUST00000111378 795 ntTSL 5 BASIC12.04□□□□□ -0.48
Traf1P39428 Gm13171-201ENSMUST00000117233 391 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Gm11235-201ENSMUST00000117763 333 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Gm15554-201ENSMUST00000120406 913 ntBASIC12.04□□□□□ -0.48
Traf1P39428 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 1700026J14Rik-201ENSMUST00000180937 794 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Mir6359-201ENSMUST00000183668 81 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Gm42617-201ENSMUST00000197640 1229 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Gm31314-201ENSMUST00000201435 609 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Gm9204-201ENSMUST00000212641 947 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Gm5189-201ENSMUST00000221796 261 ntBASIC12.04□□□□□ -0.48
Traf1P39428 AC118639.1-202ENSMUST00000226957 653 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Ascl3-201ENSMUST00000035372 700 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Traf1P39428 Zfp868-201ENSMUST00000074982 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Krtap3-2-201ENSMUST00000092699 1031 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Traf1P39428 Srp14-201ENSMUST00000009693 798 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Ankrd1-201ENSMUST00000025718 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC12.04□□□□□ -0.48
Traf1P39428 Hif1an-201ENSMUST00000040455 6194 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Lgals9-203ENSMUST00000108269 1586 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Spata33-207ENSMUST00000212760 4074 ntBASIC12.04□□□□□ -0.48
Traf1P39428 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Cacna1c-226ENSMUST00000219833 7591 ntTSL 5 BASIC12.04□□□□□ -0.48
Traf1P39428 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Gm28693-201ENSMUST00000189622 2638 ntBASIC12.04□□□□□ -0.48
Traf1P39428 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Traf1P39428 Mthfd1l-203ENSMUST00000120585 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Traf1P39428 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Traf1P39428 P2ry14-206ENSMUST00000197841 2476 ntTSL 5 BASIC12.03□□□□□ -0.48
Traf1P39428 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Traf1P39428 Ccdc167-203ENSMUST00000129091 2256 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Cyp2a21-ps-201ENSMUST00000206638 1471 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Aldh1a3-201ENSMUST00000015278 3443 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Gabrr2-201ENSMUST00000024035 1820 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Traf1P39428 Gm23061-201ENSMUST00000102348 116 ntBASIC12.03□□□□□ -0.48
Traf1P39428 Gm8216-201ENSMUST00000117232 601 ntBASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 65.6 ms