Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.02■□□□□ 0.64
Lsm1Q8VC85 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.02■□□□□ 0.63
Lsm1Q8VC85 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Lsm1Q8VC85 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Lsm1Q8VC85 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19■□□□□ 0.63
Lsm1Q8VC85 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Lsm1Q8VC85 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lsm1Q8VC85 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lsm1Q8VC85 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19■□□□□ 0.63
Lsm1Q8VC85 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lsm1Q8VC85 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19■□□□□ 0.63
Lsm1Q8VC85 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Gm15546-201ENSMUST00000122095 826 ntBASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.99■□□□□ 0.63
Lsm1Q8VC85 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Lsm1Q8VC85 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lsm1Q8VC85 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lsm1Q8VC85 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC18.96■□□□□ 0.63
Lsm1Q8VC85 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lsm1Q8VC85 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.96■□□□□ 0.63
Lsm1Q8VC85 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.96■□□□□ 0.63
Lsm1Q8VC85 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Etf1-202ENSMUST00000180351 108 ntBASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lsm1Q8VC85 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lsm1Q8VC85 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.93■□□□□ 0.62
Lsm1Q8VC85 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lsm1Q8VC85 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Lsm1Q8VC85 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
Lsm1Q8VC85 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Lsm1Q8VC85 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.93■□□□□ 0.62
Lsm1Q8VC85 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms