Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Gm43530-201ENSMUST00000195920 274 ntBASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Gm43137-201ENSMUST00000198052 594 ntBASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Notumos-201ENSMUST00000151998 2659 ntBASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Ushbp1Q8R370 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Ushbp1Q8R370 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Ushbp1Q8R370 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ushbp1Q8R370 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Ushbp1Q8R370 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Mir7075-201ENSMUST00000184187 82 ntBASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Gm29257-201ENSMUST00000186115 639 ntBASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Gm43017-201ENSMUST00000198296 752 ntBASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Gm21168-201ENSMUST00000199646 1096 ntBASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ushbp1Q8R370 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ushbp1Q8R370 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ushbp1Q8R370 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Mir6236-201ENSMUST00000184437 123 ntBASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ushbp1Q8R370 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ushbp1Q8R370 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Ushbp1Q8R370 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC22.16■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms