Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx54Q8K4L0 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
Ddx54Q8K4L0 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC26.29■■□□□ 1.8
Ddx54Q8K4L0 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx54Q8K4L0 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ddx54Q8K4L0 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ddx54Q8K4L0 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ddx54Q8K4L0 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC26.26■■□□□ 1.79
Ddx54Q8K4L0 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC26.26■■□□□ 1.79
Ddx54Q8K4L0 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ddx54Q8K4L0 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC26.26■■□□□ 1.79
Ddx54Q8K4L0 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Gm13146-201ENSMUST00000118508 780 ntBASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Gm6211-202ENSMUST00000167849 925 ntBASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Ddx54Q8K4L0 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ddx54Q8K4L0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Ddx54Q8K4L0 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ddx54Q8K4L0 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddx54Q8K4L0 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddx54Q8K4L0 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddx54Q8K4L0 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddx54Q8K4L0 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddx54Q8K4L0 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ddx54Q8K4L0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.79
Ddx54Q8K4L0 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Ddx54Q8K4L0 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC26.2■■□□□ 1.78
Ddx54Q8K4L0 AC122769.4-201ENSMUST00000228166 901 ntBASIC26.2■■□□□ 1.78
Ddx54Q8K4L0 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Ddx54Q8K4L0 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx54Q8K4L0 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
Ddx54Q8K4L0 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx54Q8K4L0 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx54Q8K4L0 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx54Q8K4L0 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ddx54Q8K4L0 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ddx54Q8K4L0 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC26.18■■□□□ 1.78
Ddx54Q8K4L0 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ddx54Q8K4L0 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC26.18■■□□□ 1.78
Ddx54Q8K4L0 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ddx54Q8K4L0 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ddx54Q8K4L0 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Gm44672-201ENSMUST00000206944 1098 ntBASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Ddx54Q8K4L0 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddx54Q8K4L0 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddx54Q8K4L0 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms