Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Snrnp40Q6PE01 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.56■□□□□ 0.4
Snrnp40Q6PE01 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Snrnp40Q6PE01 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Snrnp40Q6PE01 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Gm4968-201ENSMUST00000071458 858 ntBASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Snrnp40Q6PE01 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Snrnp40Q6PE01 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Snrnp40Q6PE01 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Snrnp40Q6PE01 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Snrnp40Q6PE01 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.52■□□□□ 0.39
Snrnp40Q6PE01 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Snrnp40Q6PE01 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Snrnp40Q6PE01 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Gm22240-201ENSMUST00000175225 82 ntBASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Gm20760-201ENSMUST00000179197 648 ntBASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Snrnp40Q6PE01 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Snrnp40Q6PE01 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Snrnp40Q6PE01 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Snrnp40Q6PE01 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Snrnp40Q6PE01 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Snrnp40Q6PE01 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Snrnp40Q6PE01 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Snrnp40Q6PE01 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Snrnp40Q6PE01 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.46■□□□□ 0.39
Snrnp40Q6PE01 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Snrnp40Q6PE01 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Snrnp40Q6PE01 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms