Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
Hmgb4Q6P8W9 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Hmgb4Q6P8W9 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Hmgb4Q6P8W9 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Hmgb4Q6P8W9 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb4Q6P8W9 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb4Q6P8W9 Gm29257-201ENSMUST00000186115 639 ntBASIC20.68■□□□□ 0.9
Hmgb4Q6P8W9 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.68■□□□□ 0.9
Hmgb4Q6P8W9 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hmgb4Q6P8W9 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
Hmgb4Q6P8W9 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hmgb4Q6P8W9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Iqck-206ENSMUST00000208658 2891 ntBASIC20.65■□□□□ 0.9
Hmgb4Q6P8W9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb4Q6P8W9 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb4Q6P8W9 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb4Q6P8W9 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb4Q6P8W9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb4Q6P8W9 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Hmgb4Q6P8W9 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hmgb4Q6P8W9 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hmgb4Q6P8W9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hmgb4Q6P8W9 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms